Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g180 ATGTTGTGCTTTGAAACATTATCGTTTGGACTCTTTAACACTTTTTACAGCTTTGGTGGACGCAAGTTAGACCATGCTCTGAAGCATGGATCAAAAAATGGTCTTTTTGTTGTTACACTTGGATGGTTTGTAGATAGCGTTCGAAGGAACGTCAGATTGAGCGAATCCCTTTATTATGTTAAGAATGTGGGAGAAAATGGTGTACGCATGGATGAATTGAATCGCCTCATTGGTTTTTCTGGTGCTGAAAATTCTTGCCTTCCTGCTGGTATGTTTGAAAATGCCAAGCAATCTGTCATGACCGAGGACCCACATTTGTGGTTCTCTGGGAGAGAGTCTAAAAGAAGTGTGGACTCAACACTATCTGGTCACTCAATGTTCATTGATTCAGATATCTCAGCTGAGCTGCGGAATAAGGTTGTTGAGGCTGCTGCAAGAGGAGGTGCCATGCTTGTAGACCAATGGTTTGTTGGTTGCAATGCGAATTATGTTGTGTGTGAAGGGCCTTCTATACAAAGATATCTTGGGCATTCCAACAATCTTGTTACGCCACTGTGGATTCTGAAAACGGCAAAGGAGAGATATGCACAAAGGCTTGTTCACATGTCTGCTGATTTGGCTAGGCAGGTTGGAATGGTGCTTGAAAATGTTCAAAACGGAATTGAATTGGAGGAAATGAACAGGGAAAATGGTCCTCAAGACACTCCCTGTCCTAGAAAGAAAGCAAGCCACGAAGAAAGGCAAGAGATTGTGAGTTTAGCGAAAGCAGGGGTTAGAAACCGCCGTGCTCGGTATATGCAGACATGTCAAACCCCAATTCGTCCAATAAACCCAAGCAGCCTTCTCGATTCAATCTGCTGGTCAATATCTGAGCCAACCTCAACTGCTTCTATTTACACAGAATCATCCAGTGTAGGAGATGTTAGCGAACACCAAACATCTGTGTTCTTTGATGCCAAAGGAGATGGCAAAGAGTCAGAAGCCTCTTTTGCAAACTTCTCCCGGCTACTTACAGAAAGCGAGAAAGCTGAGCTAATATTCAAAGGCCACTTCCTTACTATACTGCTCCCCGTCGACAGATTTGCTGAGATGGGTCCTTCTTCAAGAACGTTTTTCAGCAGTAAAGGTTTTACCTGTCTGCAGGTGTTGGACCATATCTATGCATTTTATCAGGAGAACATGACGCTTCATGAAATAGAAGCTGCCATTCATACTGACTCGAGGCATGCTGACAGACTCCGATCAGTGTATTCGAGCAAGGAGACAGGGGAGAGAGGTTATGCAATTTTCAAACGCATCGATTTCTTAGGCAGTCGTAAGAGTTTTGAAATGTTGAAACGGGTGAGTGGTGACAACAATAGTAATGTATATGAACTGGTGATTAGAGCGTAA 1392 43.39 MLCFETLSFGLFNTFYSFGGRKLDHALKHGSKNGLFVVTLGWFVDSVRRNVRLSESLYYVKNVGENGVRMDELNRLIGFSGAENSCLPAGMFENAKQSVMTEDPHLWFSGRESKRSVDSTLSGHSMFIDSDISAELRNKVVEAAARGGAMLVDQWFVGCNANYVVCEGPSIQRYLGHSNNLVTPLWILKTAKERYAQRLVHMSADLARQVGMVLENVQNGIELEEMNRENGPQDTPCPRKKASHEERQEIVSLAKAGVRNRRARYMQTCQTPIRPINPSSLLDSICWSISEPTSTASIYTESSSVGDVSEHQTSVFFDAKGDGKESEASFANFSRLLTESEKAELIFKGHFLTILLPVDRFAEMGPSSRTFFSSKGFTCLQVLDHIYAFYQENMTLHEIEAAIHTDSRHADRLRSVYSSKETGERGYAIFKRIDFLGSRKSFEMLKRVSGDNNSNVYELVIRA* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1786447 1789567 - Vvi4g180 Vvi4g180 784959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g180 463 Pfam Family of unknown function (DUF6699) 373 447 IPR046522 -
Vvi4g180 463 Gene3D BRCT domain 14 66 IPR036420 -
Vvi4g180 463 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 17 463 - -
Vvi4g180 463 MobiDBLite consensus disorder prediction 227 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g180 - - - vvi:100262753 894.419
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g180 . . . . Bpe02g01568 . . . . . . . . . Sed08g1811 . . Bhi04g01532 Tan02g1572 Cmetu03g1762 . Hepe08g1448 . Lcy13g2233 . . . . . . . . . Cone17ag0955 Cone20ag0299 . . . . . Blo18g00254 . Bda13g01582 Bpe14g00286 . . Bma02g00333 . . . . . . Car05g00889 . . . . . . . . . Cla08g00978 Cam08g1427 Cec08g1005 Cco08g1128 Clacu08g1132 . Cre08g0915 Lsi08g00825 . Chy03g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007854 1 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36