Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g182 ATGCTCATTCGCTCTGGGAGATTTTCAGTTCGAATTGCAGACTTGGGACCCTCTATCAAGTTGGAACCGAGCGAGGAGAAGGGACTACTTGGTGAAGCTCTGCAGTCTGGTCGTGCTGAATATGTATCTGCCGACCTTCGAGACAAGGCTCAAGTGCTTAAAGCATGCCAAGGAGCTGAGGCTGTTTTCCACATGGCTGCTCCAGATTCATCCATTAACAATCACCAGCTCCATCATTCAGTCAATGTGCAAGGAACAAAGAATGTAATTGATGCCTGTATTGAGCAAAAAGTAAAGAGACTTATCTATACAAGCTCTCCTAGTGTGGTTTTTGATGGGGTTCACGGAATATTTAATGGGGACGAGTCACTGCCGTATCCAGATAAGCACAATGATTCATATTCGGCAACTAAAGCTGAAGGAGAGGCATTGGTGATCAAGTCAAATGGTACTAATGGACTTCTGACATGCTGCATACGTCCAAGCAGCATCTTTGGCCCTGGCGATAAGTTGTTGGTTCCGTCTTTGGTTAATGCTGCAAGGGCTGGGAAATCCAAGTTCATCATTGGTGATGGCAATAACATGTATGATTTCACTTATGTTGAAAATGTGGCACATGCCCATATATGTGCTGAACAAGCTCTGGCTTCAGAAGGGAAGATTGCAGAGCAAGCTGCAGGGCAGGCATACTTTATAACCAATATGGAACCAATCAAGTTTTGGGAGTTTGTCTCACTTATTCTTGAAGGTCTTGGCTATGAAAGGCCAAGAATAAAGATCCCTGCCTTGGTTATGATGCCTATCGCACACATGGTGGAGTGGACCTATAAGATGTTAGCCCCATATGGTATGAAGGTTCCTCAGTTGACCCCTTCAAGAATTAGGCTCCTCTCTTGCAGCAGAACTTTTAGTTGTTCAAAAGCGAAGGATCAACTTAGCTACACGCCCATTGTATCACTCCAGGAGGGTCTAAGGAGGACAATTGATTCATACCCAGATTTGAGAGCTGAACATCTTCCTAAAAGAGAGGGACCATCTAAAGCTTCCAGATATCTTGGAAGTGGAAGAGTGGCTGACACACTTCTGTGGAAGGATAAAAAGCTGGCACTCACCACATTGTTAGTTTTGATGGCGTTTTACCACAACTTCATTGCATCTGGCTATACCATCGTCACTGCAGTTTCAAAACTTTTCTTGGTGGCATCAATATTCTTGTTCATCCATGGCAATTTACCTGAGAAAATATTGGGGTATACGGTTGAGAAAATTCCTCCATCAAATTTCCATTTCTCAGAAGAGAGGTCACATCGAGCTGCTCTCTCAGTAGCTTCATCATGGAATACTGCTGTAAATGTTTTAAAATCTCTTTGCAAGGGGGATGACTGGATGCTGTTCCTTAAGGTTGTTCTCTCCCTATTGATTCTCAGCTTCCTTGGAGCTATTTCACTGCAAAGCTTATTTGTTACAGGGCTTCTAATTGCCTTTGTAGCTTTCTACATCTATGAGAACAAGGAAGAAGAAATCGACAGACTGGCTTCAGAAGCTCTCTCCTTCAGCTGCAAATTGAAATCTGATATAGCCAAAAAATTACCTACCTTCAAGAAATTCAGTCCTAGTCGGTAA 1623 43.19 MLIRSGRFSVRIADLGPSIKLEPSEEKGLLGEALQSGRAEYVSADLRDKAQVLKACQGAEAVFHMAAPDSSINNHQLHHSVNVQGTKNVIDACIEQKVKRLIYTSSPSVVFDGVHGIFNGDESLPYPDKHNDSYSATKAEGEALVIKSNGTNGLLTCCIRPSSIFGPGDKLLVPSLVNAARAGKSKFIIGDGNNMYDFTYVENVAHAHICAEQALASEGKIAEQAAGQAYFITNMEPIKFWEFVSLILEGLGYERPRIKIPALVMMPIAHMVEWTYKMLAPYGMKVPQLTPSRIRLLSCSRTFSCSKAKDQLSYTPIVSLQEGLRRTIDSYPDLRAEHLPKREGPSKASRYLGSGRVADTLLWKDKKLALTTLLVLMAFYHNFIASGYTIVTAVSKLFLVASIFLFIHGNLPEKILGYTVEKIPPSNFHFSEERSHRAALSVASSWNTAVNVLKSLCKGDDWMLFLKVVLSLLILSFLGAISLQSLFVTGLLIAFVAFYIYENKEEEIDRLASEALSFSCKLKSDIAKKLPTFKKFSPSR* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1807543 1816843 - Vvi4g182 Vvi4g182 784961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g182 540 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 1 342 - -
Vvi4g182 540 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 342 - -
Vvi4g182 540 ProSiteProfiles Reticulon domain profile. 357 540 IPR003388 -
Vvi4g182 540 Gene3D - 5 335 - -
Vvi4g182 540 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 333 IPR036291 -
Vvi4g182 540 Pfam Reticulon 357 514 IPR003388 -
Vvi4g182 540 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 3 260 IPR002225 GO:0003854|GO:0006694|GO:0016616
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g182 K23558 3BETAHSDD; plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418] - vvi:100257631 1049.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g182 . . . . . . Bma04g00296 . . . . . . . . . . Bhi04g01534 Tan02g1571 . . Hepe08g1449 . Lcy13g2234 . . . . . . . . . Cone17ag0956 Cone20ag0300 . . . . Blo17g00268 . . Bda13g01581 Bpe14g00288 . . Bma02g00332 . . . . . . Car05g00887 . . . . . . . . . Cla08g00977 Cam08g1426 Cec08g1004 Cco08g1126 Clacu08g1131 . Cre08g0914 Lsi08g00824 . Chy03g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008574 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35