Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g184 ATGTCTGACGACGATGATTTCCAGGAGATTCCTCTCACCCAAGCAACTCAACAACCTCTCAAGCCCTCCGATTCATCGCGTCGGCCATCCAAGCGGCCAAAGGCTGCGGCCACCGCCGCTCCTGGCAAGGAGAATGTGCCGCCGAGTCGGAAAAAGAGAGATTGTTCGGAGAGAGAGGAGTTGAAATCCAAGGGGAGTTATTTATGTGATTCTATTGAGTCTAGGTTGCTGAATGCCAGATCTGGTGGCGACGGCAATATTACTTGTGGATTCAGTGAGGAATCGGAGGGGAGCTATTCGTGTAATTCTGTGGAGTCTAGGTTGCTGAAGTCGAGATCTGGTGGTGATGGCGATGGAAATGGTGGATTCTGTGAGGAATCGGATGAGGATTTTGAGCAGCTTGACGTATTGATCAGGCTGTGTTCTGAGGGCGAAGAGGAACCTGATTCTGATGGATTTCGATTTCGTGAACAGCGGGGCAGTGGTTCGGAAGGACGAGGGTTGGTTCGGTGTCCTTTATGTGAGATTGACATTTCGGATTTGAACGATGAGTTGCGACAGGTCCATACTAATGGTTGCCTTGACAGACTGGAGGCTGATAATGTCCTTCGGAATGGTGACAGAGAATGTCAATTTCCTCAGCCCTTTAATGATGGATCTCCTGTTCAAACTCATCAGAAAGTGGTTGATGTATCTCCTGTTATTGGATGGATACACAGTCTGGGTTTAGGAAGATATGAAGAAGCTTTTATCAGAGAAGAGATTGATTGGGACACTCTGCAGCGGTTGACAGAAGAGGATCTATTGAACATAGGCGTCACTGCACTTGGACCAAGGAAGAGGATCGTTCATGCCCTTAGTGAACTTAGAAAAGGGAGCACTCATACGGTTGACATCCACACACATGTCCCTGCCCTCAGTGAACTTAGAAAACAAAGCACTCATGGAGTAGAGATAGAAGCTGATGCTTCTAAAGCCACTGTTGATGAAACCAGTAAGCTAGCTGCAAACAAGTTGATTACTGATTATTTTCCAGGCTCTGTTACTGATAGGAGCAGAGGTTGCATTTCGTCTGGAGAGCGAAAGGCTGCTGAAAAAATCCAGTTAGGTTCTAGTAGGAAGCAAGTTGTGGTGAAAAATCATGCCAGGAGTGGAAAACTCAGGGACCTTCCCTTGTGGTGTTGTATACCAGGAACACCATTTCGAGTGGATGCTTTTCGATACCTTCGAAGAGATTGTTCCCATTGGTTTCTTACTCATTTTCACTTGGATCATTATCAAGGCCTTACCAGGTCCTTTTGTCATGGGAAGATTTATTGTTCTGCCATCACAGCAAGGCTTGTAAACATGAAGATTGGGATCCCATGGGACAGATTACAAATTTTACCCCTTAACCAGAAGATCAATATTGATGGTGTTGATGTGACATGCTTGGATGCAAACCACTGCCCTGGTTCCATAATAATACTCTTTGAACCATCCAATGGTAAGGCTGTCCTACACACAGGAGATTTTCGATTTAGTGAGGAAATGACAAGCATGTCTGTTCTGCAAATGTGTCCTATCCATACTCTAATTCTAGATACTACTTATTGCAACCCTCAGTATGACTTTCCAAAGCAGGAGGCTGTAATACAGTTTGTTATTGATGCGATCCAAGCTGAAGCTTTTAACCCAAGGACTCTTTTTTTGATTGGTAGTTACACGATTGGTAAGGAAAGGCTTTTCTTGGAGGTTGCTCGTGTTCTCCGTAAGAAGGTATATGTAAATGCAGCTAAACTGCATATTCTAGAATGCTTGGAGTTCCAGAAGGAAGATATGCAGTGGTTTACATTAAATGAACAGGAGAGCCACATTCATGTTGTGCCTATGTGGACACTAGCAAGCTTCAAACGATTGAAGCATATCTCCAATCAATATGCGGGTCGATTCAGTCTTATAGTTGCTTTCTCTCCTACTGGTTGGACATTCGGTAAAGGAAAGAAAAAGACTCCAGGGAGAAGGTGGCAGCAGGGTACCATCATAAGGTATGAAGTGCCATACAGTGAACATAGCAGCTTCACAGAACTCAGAGAGTTTGTCAAGTTTGTGTCTCCTGTAAACATAATTCCGAGTGTCAATAATCACGGGTCAGAATCTGTGGACACCATGGTTCGCCTCCTATCATCCTGA 2172 44.71 MSDDDDFQEIPLTQATQQPLKPSDSSRRPSKRPKAAATAAPGKENVPPSRKKRDCSEREELKSKGSYLCDSIESRLLNARSGGDGNITCGFSEESEGSYSCNSVESRLLKSRSGGDGDGNGGFCEESDEDFEQLDVLIRLCSEGEEEPDSDGFRFREQRGSGSEGRGLVRCPLCEIDISDLNDELRQVHTNGCLDRLEADNVLRNGDRECQFPQPFNDGSPVQTHQKVVDVSPVIGWIHSLGLGRYEEAFIREEIDWDTLQRLTEEDLLNIGVTALGPRKRIVHALSELRKGSTHTVDIHTHVPALSELRKQSTHGVEIEADASKATVDETSKLAANKLITDYFPGSVTDRSRGCISSGERKAAEKIQLGSSRKQVVVKNHARSGKLRDLPLWCCIPGTPFRVDAFRYLRRDCSHWFLTHFHLDHYQGLTRSFCHGKIYCSAITARLVNMKIGIPWDRLQILPLNQKINIDGVDVTCLDANHCPGSIIILFEPSNGKAVLHTGDFRFSEEMTSMSVLQMCPIHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPRTLFLIGSYTIGKERLFLEVARVLRKKVYVNAAKLHILECLEFQKEDMQWFTLNEQESHIHVVPMWTLASFKRLKHISNQYAGRFSLIVAFSPTGWTFGKGKKKTPGRRWQQGTIIRYEVPYSEHSSFTELREFVKFVSPVNIIPSVNNHGSESVDTMVRLLSS* 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1823201 1829318 + Vvi4g184 Vvi4g184 784963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g184 723 Gene3D - 537 684 - -
Vvi4g184 723 MobiDBLite consensus disorder prediction 46 64 - -
Vvi4g184 723 Pfam DNA repair metallo-beta-lactamase 605 709 IPR011084 -
Vvi4g184 723 Gene3D - 396 706 IPR036866 -
Vvi4g184 723 SMART SAM_4 226 292 IPR001660 GO:0005515
Vvi4g184 723 SUPERFAMILY Metallo-hydrolase/oxidoreductase 399 705 IPR036866 -
Vvi4g184 723 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 169 719 - -
Vvi4g184 723 Pfam SAM domain (Sterile alpha motif) 231 290 IPR001660 GO:0005515
Vvi4g184 723 CDD SNM1A-1C-like_MBL-fold 381 534 - -
Vvi4g184 723 MobiDBLite consensus disorder prediction 1 64 - -
Vvi4g184 723 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 169 719 - -
Vvi4g184 723 Gene3D - 225 300 IPR013761 -
Vvi4g184 723 SMART Lactamase_B_5a 313 536 IPR001279 -
Vvi4g184 723 ProSiteProfiles SAM domain profile. 229 292 IPR001660 GO:0005515
Vvi4g184 723 CDD SAM_superfamily 234 288 - -
Vvi4g184 723 MobiDBLite consensus disorder prediction 7 24 - -
Vvi4g184 723 SUPERFAMILY SAM/Pointed domain 229 291 IPR013761 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g184 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - vvi:100256089 1408.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34