Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g185 ATGGTAAAGCCGACCGCCGCAACAGCCACCACTACCTCCGAAGGGGGACAGCCGGGGAACTCGGAGACGAAATACAAGGGAGTGCGGAAGAGGAAATGGGGGAAGTGGGTGTCAGAAATACGGCTCCCCAACAGCCGAGAGAGGATTTGGCTGGGCTCCTACGACACGCCAGAGAAGGCGGCGCGGGCATTCGACGCTGCCCTCTTTTGTCTCCGCGGCCACGGCGCCAAGTTCAACTTCCCCGACAACCCTCCGGATATCCCCGGTCGGGAGTCTCTCACTCCCTCGGAGATCCAACTGGTCGCCGCGAGATTCGCCAACGAAGAACCGCCGAAAGAATGCTCGGAGTTGGAGTCGCAGCACTCGCAGTCGGAGTCGCACCACTACAACTACACGCCGTCTTGTTCGTTGTCGGAACAGTTGGAGAACGAAACGATAATGGACGGATCGTTTTGGAGCATAAGGGACTACAGCTATATCGATGGCGGTGGACTCGGGATTTCTCCGCCAAGCCCGATGGATGAGAGTGGCGGCGAAGAGTTTTTTCAGCAGTCGTCATTCCTCTGGAACTTCTGA 576 57.99 MVKPTAATATTTSEGGQPGNSETKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALFCLRGHGAKFNFPDNPPDIPGRESLTPSEIQLVAARFANEEPPKECSELESQHSQSESHHYNYTPSCSLSEQLENETIMDGSFWSIRDYSYIDGGGLGISPPSPMDESGGEEFFQQSSFLWNF* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1834171 1834747 - Vvi4g185 Vvi4g185 784964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g185 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017 15 191 - -
Vvi4g185 191 MobiDBLite consensus disorder prediction 109 123 - -
Vvi4g185 191 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g185 191 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vvi4g185 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 191 - -
Vvi4g185 191 Pfam AP2 domain 23 74 IPR001471 GO:0003700|GO:0006355
Vvi4g185 191 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vvi4g185 191 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vvi4g185 191 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Vvi4g185 191 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vvi4g185 191 MobiDBLite consensus disorder prediction 109 129 - -
Vvi4g185 191 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Vvi4g185 191 SUPERFAMILY DNA-binding domain 24 83 IPR016177 GO:0003677
Vvi4g185 191 MobiDBLite consensus disorder prediction 1 27 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g185 Vvi11g42 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14736 PF00847 AP2 6.40E-14 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g185 - - vvi:100250941 375.555