Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g187 ATGGCCGGTGACCAAAACCTCCACCATGTCTCTAAAATAGGGATCATCGGAGCTGGCATAAGCGGTATCGCAGCCGCTAAACAGCTTTCGGGTCACAGCCCAGTGGTCTTTGAGGCCACTGATTCCATAGGGGGTGTGTGGAAACACTGCACTTACACTTCAACTAAGCTTCAGACCCCTCGTTGTGATTTTGAGTTTACAGATTACCCTTGGCCTCAAAGAGATAACTCAAGCTTTCCTTCTCATATAGAGATTTTGGAGTACTTACACAACTATGCTTCACATTTTGATGTGTTGAAGTATGTGAAGTTGAACTCCAAGGTGGTGGAGATGAGGTATATCGGTGATGAGAGTGAAAGTTATTTTGACCAGCTTGAGACTGAACCCAGAGAGTATGGGAGGTTGTTGAGTGGTCGTCCTGTTTGGGAGGTCGCAGTGCAGACTAACCAGTCCCCAACCCTTCAGTGGTATGCTTTTGAATGTTTGGTGATGTGCCTTGGGAAATATGGGGACATACCAAAAATGCCAAGTTTTCCACCAAACAAAGGTAGAGAAATATTTCAAGGCAAGGTTTTGCACTCCCTGGATTACTCAAAGCTGGATGAAGCAGCTGCTCATAGGCTTCTCAAAGGAAAGAAAGTTGTAGTCATTGGATACAAGAAATCAGCAATTGATTTAGCCATGGAGGCAGCAGAAGCAAATCAAGATCCAGATGGGCAACCATGCACAATGGTGATAAGAACATTACATTGGACAGTCCCATCATATTGGATTTGGGGGTTACCATTTTTCTTGTTCTATTCCACAAGGTTTTCACAGTTCCTCCATGAGAGGCCAAATCAAAGCTTTCTCAGGACCCTTCTATGCTTTCTCTTATCTCCAATGAGAAAAGCCATATCAAAGTTTATAGAGTCATACTTGGTGTGGAAGCTGCCTCTGGTGAAGTATGGACTGAAACCAGATCACCCATTTGAGGAAGACTATGCTTCTTGCCAGATGGCCATCTTGCCGGAAAATTTCTTCGCCGAGGCGGACAACGGCCGGATCTTGTTCAAGAGGTCGTCCAAATGGTGGTTCTGGAGCGGCGGAATCGAGTTGGAGGACAACACAAAATTGGAAGCTGATGTTGTGGCTCTTGCTACTGGATTTGATGGGAACAAGAAGCTCAAAGCTTTACTTCCTCAGCCCTTCTGCCGTTTGATCCAGCACTCCACTGGGAACCTACCATTGTACAGGGGCACCATCCATCCACTGATTCCAAACATGGCGTTTGTGGGGTATGTCGAGAGCGTCTCCAACCTGCACACCTCCGAGTTACGCAGCAAATGGCTGGCGCAACTGGTGGACGAGCAGTTCAAGCTTCCCACCATCGAGAAGATGCTGGAGAAAACCAAAAAAGAGATGCAAGTAATGAAGAGAAGTACGAGGTTCTACAAGAGAAACTGCATTTCCACCTTCAGTATCAACCACAGTGATGAGCTCTGTGAGGACATGGGGTGGAAATCTTGGAGGAAGAACACCTGGTTTTCTGAAGCTTTCGGCCCTTACACTTGCCAAGACTATCAATACTGA 1572 46.31 MAGDQNLHHVSKIGIIGAGISGIAAAKQLSGHSPVVFEATDSIGGVWKHCTYTSTKLQTPRCDFEFTDYPWPQRDNSSFPSHIEILEYLHNYASHFDVLKYVKLNSKVVEMRYIGDESESYFDQLETEPREYGRLLSGRPVWEVAVQTNQSPTLQWYAFECLVMCLGKYGDIPKMPSFPPNKGREIFQGKVLHSLDYSKLDEAAAHRLLKGKKVVVIGYKKSAIDLAMEAAEANQDPDGQPCTMVIRTLHWTVPSYWIWGLPFFLFYSTRFSQFLHERPNQSFLRTLLCFLLSPMRKAISKFIESYLVWKLPLVKYGLKPDHPFEEDYASCQMAILPENFFAEADNGRILFKRSSKWWFWSGGIELEDNTKLEADVVALATGFDGNKKLKALLPQPFCRLIQHSTGNLPLYRGTIHPLIPNMAFVGYVESVSNLHTSELRSKWLAQLVDEQFKLPTIEKMLEKTKKEMQVMKRSTRFYKRNCISTFSINHSDELCEDMGWKSWRKNTWFSEAFGPYTCQDYQY* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1863213 1868860 + Vvi4g187 Vvi4g187 784966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g187 523 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 5 522 - -
Vvi4g187 523 SUPERFAMILY FAD/NAD(P)-binding domain 12 264 IPR036188 -
Vvi4g187 523 Pfam Flavin-binding monooxygenase-like 12 501 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi4g187 523 Gene3D - 347 522 IPR036188 -
Vvi4g187 523 PIRSF FMO 9 523 IPR000960 GO:0050660|GO:0050661
Vvi4g187 523 PANTHER DIMETHYLANILINE MONOOXYGENASE 5 522 - -
Vvi4g187 523 SUPERFAMILY FAD/NAD(P)-binding domain 343 521 IPR036188 -
Vvi4g187 523 Gene3D - 6 282 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g187 K00485 FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase [EC:1.14.13.8 1.8.1.-] - vvi:100268120 1074.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g187 Vvi11g35 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g187 . . . . . Bpe02g00314 . . . . . . . . . . . Bhi04g01538 Tan02g1562 Cmetu03g0531 . Hepe08g1457 . Lcy13g2236 . . . . . . . Cone4ag1711 Cone7ag1629 . . . . . . Blo17g00265 . . . Bpe14g00290 . . Bma02g00330 . . . . . . . . . . . . . . . . Cla08g00973 Cam08g1422 Cec08g1001 Cco08g1124 Clacu08g1126 . Cre08g0910 Lsi08g00821 . Chy03g00644 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002096 2 2 3 2 3 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 63