Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g19 ATGGGTATCACTTCCAGGCCCATTTTTGAAATCCATATTATTATTATTACTAGGCCCAATTTTGTGATGAAGCCTAAGCCCAAGTGGAAAGATATAAAAAAAAAGGAAGAGAAGGAAAAGAAGGGCTCAGGCTTTAAAAGCGGTAAGGAACTCAACGTCACCAAAATGCGGAAACCACCATTTTTATTTACCAAAATTCCATTCCCCGCTCTATTTCTCCTCCTCGTCTTCTCCTTAACCTTTCAAGTAATTTCCCAAAATCTAGATGCTGAACGATCAATCCTACTAGACGTTAAACAACAACTGGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTCGCCCTGTGATTGGCCGGAAATTACATGCATCGACAATATTGTCACTGAAATTTCACTCAGCTACAAGACCATCACAAAGAAAATTCCGGCCAGAATTTGTGACCTCAAGAACCTAATCGTACTTGACGTCTCCTACAATTACATTCCAGGCGAGTTCCCGGATATTCTCAATTGCTCTAAGCTTGAATATCTCCTCTTGTTGCAAAACTCCTTTGTGGGTCCAATTCCAGCTGATATTGATCGACTTTCACGTCTCCGGTACCTAGACCTCACCGCAAACAACTTCTCTGGAGATATTCCCGCAGCAATTGGGCGGCTACAGGAGCTGTTCTACTTGTTTCTGGTTCAAAATGAGTTCAACGGCACCTGGCCAACGGAGATTGGTAATTTGGCAAATCTTGAACAATTGGCCATGGCCTATAATGACAAATTCCGGCCTTCAGCCCTTCCAAAGGAGTTTGGCGCATTGAAGAAGCTGAAGTTTCTGTGGATGACGGAGGCGAATTTGATCGGCGAAATACCGAAGAGCTTCAACAATCTATCGAGTCTGGAACGCTTGGACCTCTCACTCAACGAATTGAATGGAGAGATACCAACAAATATAAGCCTCATTCCTACACTTGAAACCTTCAAAGTTTCCAACAATCGCTTTTCAGGCGAGATTCCTTCCGGCATCTGGACATCCCCGGACATGGTATCGGTGATGTTAGCTGGAAATTCATTCTCGGGGGCACTTCCAAGTAGATTGACAAGGAATTTGTCCAGAGTGGATATCAGTAACAACAAGTTTTCTGGTCAAATTCCTGCTGAAATCTCTTCTTGGATGAACATAGGTGTGCTCAATGCCAACAACAATATGTTGTCAGGAAAAATTCCAATGGAATTGACCAGTCTTTGGAACATCTCTCTTAATATCCTCAATCTTTCGTCTAACCAACTCTCTGGGTTGGTCCCCTTTGAGTTTCAAAATGAAGCATACAATTACAGTTTCTTGAACAATCCCAAGCTGTGTGTCAATGTTGGCACTCTGAAACTCCCTAGATGTGATGCCAAAGTCGTTGACTCCGACAAATTGTCAACCAAATATCTCGTTATGATCCTAATTTTAGCTCTATCTGGTTTCCTAGCTGTTGTTTTCTTTACCCTGGTCATGGTTCGAGACTATCACAGGAAGAATCATAGTCGAGACCATACAACTTGGAAGCTTACTCGATTCCAAAATCTGGATTTCGATGAACAGAACATATTGTCCGGTTTGACAGAAAATAATTTGATCGGACGTGGTGGGTCAGGGAAAGTATACCGAATTGCTAATGACCGTTCTGGTAAAATCTTTGCTGTTAAAATGATTTGTAACAACGGGAGATTGGATCACAAGCTTCAGAAACCATTCATAGCAAAAGACGAGATATTGGGCACCTTACACCATTCCAATATAGTGAAGTTGTTGTGCTGCATATCAAATGAAACCACAAGTCTTCTTGTTTACGAGTACATGGAGAACCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACATTGTCCATGACAAGTTTAGTTCATAACTTCATCTTGGATTGGCCAACAAGGTTGCAGATTGCCATCGGAGTTGCAAAAGGCCTACGCCACATGCATGAATACTCCAAGATGTTGGTCAAGCAAGGAGAGCCTGACACCATGTCAGGAGTTGCAGGCTCTTACGGATATATTGCCCCCGAGTATGCTTATACAACAAAGGTGAACGAGAAGATTGATGTATATAGCTTTGGAGTAGTTCTGCTTGAGCTGGTGACGGGGAGAGAACCCAACAACGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAGTTTAGAGAAGGGAAAACCATTGAGGAAGTGGTGGATGAGGAGATCAAGGAACAATGTGACAGAGCACAAGTGACCACTCTCTTCAATCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAGGAGGTTTTGGAAATTCTTCAACAAAGCGGTAAGGAACTCAACGTCACCAAAATGCGGAAACCACCATTTTTATTTACCAAAATTCCATTCCCCGCTCTATTTCTCCTCCTCGTCTTCTCCTTAACCTTTCAAGTAATTTCCCAAAATCTAGATGCTGAACGATCAATCCTACTAGACGTTAAACAACAACTGGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTCGCCCTGTGATTGGTCGGAAATTACATGCATCGACAATATCGTCACTGAAATTTCACTCAGCTACAAGACCATCACAAAGAAAATTCCAGCCAGAATTTGTGACCTCAAGAACCTAATCGTACTTGACGTCTCCTACAATTACATTCCAGGCGAGTTCCCGGATATTCTCAATTGCTCTAAGCTCGAATATCTCCTCTTGTTGCAAAACTCCTTCGTGGGTCCAATTCCAGCTGATATTGATCGACTTTCACGTCTCCGGTACCTAGACCTCACCGCAAACAACTTCTCTGGAGATATTCCCGCAGCAATTGGGCGGCTACGGGAGCTGTTCTACTTGTTTATGGTTCAAAATGAGTTCAACGGCACCTGGCCAACAGAGATTGGTAATTTGGCAAATCTTGAACAATTGGCCATGGCCTATAATGACAAATTCCGGCCTTCAGCCCTTCCAAAGGAATTGTCAGGCCGCGTTCCTTCATCGATAGAAGCTTTCAACTTGAAAGAAATTGATCTTTCCGACAACCATTTGACGGGGCCGATACCAGCAGGTTTCGTGAAGCTACAAAATTTGACATGTTTGAATCTTTTTTGGAATCAGTTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACACTTGAAACCTTCAAAGTTTTTAGCAATAAATTGAGTGGAGTTTTGCCCCCAGCATTTGGCCTTCATTCGGAGCTCAAATTCTTTGAGATTTTTGAGAATAAACTAAGCGGGGAACTACCGCAACATTTATGCGCTAGGGGAACTTTGCTTGGAGTGATTGCTTCCAACAATAATCTCAGCGGAGAAGTGCCCAAGTCCCTCGGGAATTGCAGAAGTTTGCTCACCATTCAGGTTTCCAACAATCGCTTTTCAGGCGAGATTCCTTCTGGCATCTGGACATCCCCGGGCATGGTATCGGTGATAGTGGATATCAGTAACAACAAGTTTTCTGGTCCAATTCCTACTGAAATCTCTTCTTGGATGAAAATAGGTGTTCTTAATGCCAACAACAATATGTTGTCAGGAAAAATTCCAGTGGAATTGACCAGTCTTTGGAACATCTCTGTTCTCCTTACTTACCTCGACCTGTCAGAAAACCAGTTCTTAGGTCAAATTCCTTCTGAACTCGCATACAATTACAGTTTCTTGAACAATCCCAAACTCTGTTGCCTTCTTTACCCTGTTCATGGTTCGACACTATCACAGGAAGAATCATAG 3810 43.1 MGITSRPIFEIHIIIITRPNFVMKPKPKWKDIKKKEEKEKKGSGFKSGKELNVTKMRKPPFLFTKIPFPALFLLLVFSLTFQVISQNLDAERSILLDVKQQLGNPPSLQSWNSSSSPCDWPEITCIDNIVTEISLSYKTITKKIPARICDLKNLIVLDVSYNYIPGEFPDILNCSKLEYLLLLQNSFVGPIPADIDRLSRLRYLDLTANNFSGDIPAAIGRLQELFYLFLVQNEFNGTWPTEIGNLANLEQLAMAYNDKFRPSALPKEFGALKKLKFLWMTEANLIGEIPKSFNNLSSLERLDLSLNELNGEIPTNISLIPTLETFKVSNNRFSGEIPSGIWTSPDMVSVMLAGNSFSGALPSRLTRNLSRVDISNNKFSGQIPAEISSWMNIGVLNANNNMLSGKIPMELTSLWNISLNILNLSSNQLSGLVPFEFQNEAYNYSFLNNPKLCVNVGTLKLPRCDAKVVDSDKLSTKYLVMILILALSGFLAVVFFTLVMVRDYHRKNHSRDHTTWKLTRFQNLDFDEQNILSGLTENNLIGRGGSGKVYRIANDRSGKIFAVKMICNNGRLDHKLQKPFIAKDEILGTLHHSNIVKLLCCISNETTSLLVYEYMENQSLDRWLHGKKQRTLSMTSLVHNFILDWPTRLQIAIGVAKGLRHMHEYSKMLVKQGEPDTMSGVAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNNEHMCLVEWAWDQFREGKTIEEVVDEEIKEQCDRAQVTTLFNLGLMCTTTLPSTRPTMKEVLEILQQSGKELNVTKMRKPPFLFTKIPFPALFLLLVFSLTFQVISQNLDAERSILLDVKQQLGNPPSLQSWNSSSSPCDWSEITCIDNIVTEISLSYKTITKKIPARICDLKNLIVLDVSYNYIPGEFPDILNCSKLEYLLLLQNSFVGPIPADIDRLSRLRYLDLTANNFSGDIPAAIGRLRELFYLFMVQNEFNGTWPTEIGNLANLEQLAMAYNDKFRPSALPKELSGRVPSSIEAFNLKEIDLSDNHLTGPIPAGFVKLQNLTCLNLFWNQLSGEIPANISLIPTLETFKVFSNKLSGVLPPAFGLHSELKFFEIFENKLSGELPQHLCARGTLLGVIASNNNLSGEVPKSLGNCRSLLTIQVSNNRFSGEIPSGIWTSPGMVSVIVDISNNKFSGPIPTEISSWMKIGVLNANNNMLSGKIPVELTSLWNISVLLTYLDLSENQFLGQIPSELAYNYSFLNNPKLCCLLYPVHGSTLSQEES* 1270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 212414 239173 + Vvi4g19 Vvi4g19 784798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g19 1269 ProSiteProfiles Protein kinase domain profile. 535 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g19 1269 SUPERFAMILY Protein kinase-like (PK-like) 516 786 IPR011009 -
Vvi4g19 1269 Gene3D Ribonuclease Inhibitor 81 141 IPR032675 -
Vvi4g19 1269 Gene3D Ribonuclease Inhibitor 142 467 IPR032675 -
Vvi4g19 1269 Gene3D Ribonuclease Inhibitor 1009 1261 IPR032675 -
Vvi4g19 1269 Pfam Protein kinase domain 675 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g19 1269 Pfam Protein kinase domain 537 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g19 1269 SMART LRR_typ_2 417 439 IPR003591 -
Vvi4g19 1269 SMART LRR_typ_2 296 320 IPR003591 -
Vvi4g19 1269 SMART LRR_typ_2 940 964 IPR003591 -
Vvi4g19 1269 SMART LRR_typ_2 198 222 IPR003591 -
Vvi4g19 1269 SMART LRR_typ_2 1045 1069 IPR003591 -
Vvi4g19 1269 Pfam Leucine rich repeat N-terminal domain 89 125 IPR013210 -
Vvi4g19 1269 Pfam Leucine rich repeat N-terminal domain 831 867 IPR013210 -
Vvi4g19 1269 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 814 1011 - -
Vvi4g19 1269 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1010 1222 - -
Vvi4g19 1269 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 666 794 - -
Vvi4g19 1269 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 322 418 - -
Vvi4g19 1269 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 72 323 - -
Vvi4g19 1269 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 414 665 - -
Vvi4g19 1269 ProSiteProfiles Leucine-rich repeat profile. 418 439 IPR001611 GO:0005515
Vvi4g19 1269 Gene3D Transferase(Phosphotransferase) domain 1 526 668 - -
Vvi4g19 1269 SUPERFAMILY L domain-like 98 461 - -
Vvi4g19 1269 ProSitePatterns Protein kinases ATP-binding region signature. 541 564 IPR017441 GO:0005524
Vvi4g19 1269 SUPERFAMILY RNI-like 873 1163 - -
Vvi4g19 1269 Gene3D Transferase(Phosphotransferase) domain 1 669 801 - -
Vvi4g19 1269 Gene3D Ribonuclease Inhibitor 830 1008 IPR032675 -
Vvi4g19 1269 Pfam Leucine Rich Repeat 1023 1045 IPR001611 GO:0005515
Vvi4g19 1269 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 666 794 - -
Vvi4g19 1269 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 72 323 - -
Vvi4g19 1269 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 322 418 - -
Vvi4g19 1269 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 414 665 - -
Vvi4g19 1269 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 814 1011 - -
Vvi4g19 1269 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 1010 1222 - -
Vvi4g19 1269 SUPERFAMILY L domain-like 1125 1245 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76608 PF00069 Pkinase 1.20E-15 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g19 K00924 - vvi:100262856 833.943