Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g190 ATGTTCGAGGAAGCCGTTTTATCGATTAAGTCTCTGCTTGTTGACCACTACTCTTCTTCTTCACCTTCTCTGCGAAAATTGTTTTATTCAGTTGTATGCCGGGTTGCTACTATTTTGAGGACCAGATACACTGCTCCCGGGTTCTGGCTTTCTGGGCTAAGGCTTTTTGAGCAGGCTGAATCCATGGTGACTGATTCTTCTGAGAAGGAGAACTTGAAGAGTTGCATTGCTGGTGCTAGGCAGCAGCTGAACCATGTAGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCAATGGCTGGTGCAATCTAACAACCTCTTGACAGCTGCTGCTACACTTTCTAACTTAGAATCAGCCAATGGTCTTACAGAAAATAATAATATCACATCAGAAAATGCTGCTAGTATACTTTTGCAGCTGATGGATGACCTTCAGGATATTGTGCCTGAGATCCTGGACAATGATACTAGAGCCCCAAGAGTACCACCTGCCAGTAAAGAAGTGGTGGCGAATCTCCCAGTTATTACTCTTACAGAAGACGCCTTATCAAAGCTCAGTGGTGATGCAGAATGTGCTATTTGCAAGGAGAACTTCGTTGTAGATGACAAAATGCAAGAGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGATCGTGCCTATGAGAGCTGGAAGCAGAGGGAGAAGGAGGCGGAAGAAGAGAGGAAAGGGGCTGCAAATGCAGTTCGAGGGGGTGAATACATGTATGTTTAG 882 45.92 MFEEAVLSIKSLLVDHYSSSSPSLRKLFYSVVCRVATILRTRYTAPGFWLSGLRLFEQAESMVTDSSEKENLKSCIAGARQQLNHVENLSEASETTENRANRGYLFEGHLTVDPEPPRPQWLVQSNNLLTAAATLSNLESANGLTENNNITSENAASILLQLMDDLQDIVPEILDNDTRAPRVPPASKEVVANLPVITLTEDALSKLSGDAECAICKENFVVDDKMQELPCKHTFHPPCLKPWLDKHNSCPICRHELLTDDRAYESWKQREKEAEEERKGAANAVRGGEYMYV* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1889357 1895999 - Vvi4g190 Vvi4g190 784969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g190 293 Coils Coil 264 284 - -
Vvi4g190 293 PANTHER ABI3-INTERACTING PROTEIN 2-1 8 287 - -
Vvi4g190 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 287 - -
Vvi4g190 293 Pfam Ring finger domain 212 254 IPR001841 -
Vvi4g190 293 SMART ring_2 213 253 IPR001841 -
Vvi4g190 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 259 IPR013083 -
Vvi4g190 293 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Vvi4g190 293 CDD RING-H2_RNF126_like 212 254 - -
Vvi4g190 293 SUPERFAMILY RING/U-box 207 260 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g190 K16274 - vvi:100247386 555.058