Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g193 ATGGAGAAATCTTGTAGTCTGCTCATCTACTTTGACAAAGGGACCCCTGCTATTGCAAATGAGATAAAGGAAGCGCTTGAAGGCAATGATGATTATGCAAAGATTGAAGCCATGAAAAAGGCAATCATGCTTTTGTTGAATGGTGAAACCTTACCTCAGCTTTTCATCACTATAGTTCGATATGTATTGCCATCTGAAGATCACACAGTCCAGAAACTGTTACTTCTTTATTTGGAGATTATTGAGAAAACTGATGCAAAAGGTAAGGTTATGCCCGAAATGATTTTGATTTGCCAGAATCTGAGGAATAATCTTCAGCACCCCAACGAGTACATCCGTGGTCATCGACATCCATTTATTAGGAGAAATGCAATTCTTGCTGTAATGTCAATTTATAAGCTTCCACAAGGCGAGCAGCTTTTGGTTGATGCACCTGAAATGATTGAAAAGGTTCTTTCTACGGAGCAGGATCCATCAGCAAAAAGGAACGCATTCCTTATGCTTTTCACTTGTGCCCAGGATCGTGCTATTAATTATTTACTAACCCATGTTGATAGGGTTCCAGAATGGGGAGAATTGCTTCAGATGGTTGTGTTGGAATTGATCCGAAAAGTCTGCAGAACCAACCGGGGAGAGAAGGGAAAGTACATAAAGATCATTATATCTTTATTGAATGCCCCTTCAACAGCTGTTATTTATGAATGTGCTGGAACTCTTGTTTCTTTGTCCTCTGCTCCTACGGCAATTAGAGCTGCAGCCAACACCTATTGTCAGCTTCTTCTCTCTCAGAGTGATAACAATGTGAAACTTATTGTACTTGATCGCCTTAATGAACTCAAGTCTTCTCATAGAGAAATTATGGTTGACATGATAATGGATGTGCTCAGGGCACTTTCAAGTCCAAACCTTGACATTAGAAGGAAGACACTTGATATTGTGCTTGAGTTGATAACTCCACGGAACATCAATGAGGTTGTTCTTACCTTAAAGAAGGAAGTTGTGAAGACTCAGAGTGGAGAGCTTGAGAAGAATGGGGAGTATCGGCAAATGCTCATCCAAGCAATTCATTCTTGTGCAATTAAGTTTCCTGAAGTGGCAAGCACAGTGGTTCATCTGTTGATGGATTTCTTGGGAGACAGCAATGTGGCTTCAGCTATCGATGTGGTTGTTTTTGTGCGAGAGATAATTGAGACCAACCCAAAACTTAGGGTCTCAATAATAACTAGGCTGTTGGACACTTTCTACCAGATCCGAGCTGCACGTGTTTGCTCATGTGCTCTTTGGATCATTGGAGAGTATTGTCTCTCACTCTCTGAGGTTGAGAGTGGTATTACAACCATTAAACAGTGTCTTGGGGACTTACCTTTCTTCTCTAGTGCCGCCTCTGAAACTGCTTTCTCACCTCCTACCCTTGTTCAAGGATCCTTGTCTTCTGGGAATTTGAGATCCCTTCTTCTCACTGGTGACTTTTTTCTGGGGGCAGTTGTGGCCTGCACACTGACAAAGCTTGTTTTGCGATTGGAAGAGGTTCAGCCATCAAAAGCTGAAGTTAACAAAGTATCTAGCCAAGCATTATTGATCATGGTCTCAATGCTGCAATTAGGGCAATCTTCAGTTCTTCCTCACCCAATTGATAATGATTCTTATGATAGGATTGTTCTCTGTATAAGATTGCTTTGCAATACTGGTGATGATATCAGGAAGATATGGCTGCAGTCTTGCCGCCAGAGTTATGTTAAAATGCTGGCAGACAAACAGTTAAGGGAAACAGAGGAGATAAAAGCAAAGGCTCAGATCTCTTATGCCCAGCCAGATGACCTCATTGACTTTTACCATTTAAAGAGCAGGAAGGGCATGAGTCAGCTGGAGTTGGAAGATGAAGTCCAAGATGATTTAAAACGTGCAACTGGAGAGTTCATCAAGGATGGGGATGATGCAAATAAGCTAAACCGCATTCTTCAACTCACTGGATTTAGTGACCCTGTATATGCAGAAGCATATGTGACAGTTCATCATTATGATATTGTCCTTGATGTTACTGTTATCAATCGAACAAAGGAGACCCTCCAGAATCTGTGCTTGGAATTGGCCACTATGGGTGATCTTAAACTTGTTGATCGTCCGCAAAACTATACTCTAGCTCCTGAATCAAGCAAGCAAATAAAGGCCAATATTAAGGTGTCTTCAACTGAAACTGGTGTCATATTTGGGAACATTGTTTATGAGACTTCAAACGTGCATGAGCGAATGGTTGTTGTCCTCAATGACATTCACATTGACATCATGGACTACATATCTCCTGCTGTTTGTACTGATGTGGCCTTCAGAACTATGTGGGCAGAGTTTGAATGGGAAAACAAGGTTGCTGTCAACACAGTATTACAAAATGAGAAGGAATTTCTTGAGCACATTATCAAATCAACCAACATGAAGTGCCTCACTGCCTCGTCAGCACTGGATGGTGATTGTGGATTCTTGGCTGCTAACCTCTATGCAAAGAGCGTGTTTGGGGAGGATGCCTTGGTAAACATAAGCATTGAGAAACAGGCAGATGGGAAACTGAGTGGGTATATCAGGATAAGGAGCAAGACCCAGGGGATTGCTCTCAGTCTTGGGGACAAGATCACTCTCAAGCAGAAGGGAGGCAGTTGA 2652 41.97 MEKSCSLLIYFDKGTPAIANEIKEALEGNDDYAKIEAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTVQKLLLLYLEIIEKTDAKGKVMPEMILICQNLRNNLQHPNEYIRGHRHPFIRRNAILAVMSIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCAQDRAINYLLTHVDRVPEWGELLQMVVLELIRKVCRTNRGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLIVLDRLNELKSSHREIMVDMIMDVLRALSSPNLDIRRKTLDIVLELITPRNINEVVLTLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVVVFVREIIETNPKLRVSIITRLLDTFYQIRAARVCSCALWIIGEYCLSLSEVESGITTIKQCLGDLPFFSSAASETAFSPPTLVQGSLSSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSKAEVNKVSSQALLIMVSMLQLGQSSVLPHPIDNDSYDRIVLCIRLLCNTGDDIRKIWLQSCRQSYVKMLADKQLRETEEIKAKAQISYAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFIKDGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVHERMVVVLNDIHIDIMDYISPAVCTDVAFRTMWAEFEWENKVAVNTVLQNEKEFLEHIIKSTNMKCLTASSALDGDCGFLAANLYAKSVFGEDALVNISIEKQADGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS* 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1902516 1909484 + Vvi4g193 Vvi4g193 784972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g193 883 Pfam Adaptin N terminal region 115 440 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi4g193 883 Pfam Adaptin N terminal region 18 114 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi4g193 883 Gene3D - 10 537 IPR011989 -
Vvi4g193 883 PANTHER COATOMER SUBUNIT BETA 115 459 - -
Vvi4g193 883 PANTHER COATOMER SUBUNIT BETA 1 114 - -
Vvi4g193 883 PANTHER COATOMER SUBUNIT BETA 459 883 - -
Vvi4g193 883 Pfam Coatomer beta C-terminal region 604 742 IPR011710 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vvi4g193 883 SUPERFAMILY ARM repeat 11 573 IPR016024 -
Vvi4g193 883 PIRSF Beta-COP 114 471 IPR016460 GO:0005737|GO:0006886
Vvi4g193 883 PIRSF Beta-COP 458 883 IPR016460 GO:0005737|GO:0006886
Vvi4g193 883 PIRSF Beta-COP 1 115 IPR016460 GO:0005737|GO:0006886
Vvi4g193 883 PANTHER COATOMER SUBUNIT BETA 1 114 IPR016460 GO:0005737|GO:0006886
Vvi4g193 883 PANTHER COATOMER SUBUNIT BETA 115 459 IPR016460 GO:0005737|GO:0006886
Vvi4g193 883 PANTHER COATOMER SUBUNIT BETA 459 883 IPR016460 GO:0005737|GO:0006886
Vvi4g193 883 Pfam Coatomer beta subunit appendage platform 748 875 IPR029446 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g193 K17301 COPB1, SEC26; coatomer subunit beta - vvi:100242255 1658.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004338 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 41