Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g195 ATGGTGAGTGACCCTAACATTTTCCCTTCGCCGCACATGGTGACGGGGTTCTCTCTCCGCCCGGTTACATCCTCCATTTCTCATTTTCCTCCAAAACATAGGGTTAGGTTTAGGGTTTCTGAGTCACTCTCTTTCCCAATTCGGACACCGAGTCGACTCAGTTCCAAGCAAATGAGCACCGAATCTGCCGCAGACTCAAATGCCATCGTCTCCAGCGACGGAAAAGCGGCAAACCCCGATATTCTGGTGCAGTACGTAGTTCTCCGGCGAGACCTGATCGAGAAGTGGCCGCTGGGGAGCATCGTCACGCAGGGCTGCCATGCTTCAGTGTGTGCGATTTGGGCTTACAAAGACGATCCCCACACGATCGAGTACTGCAGCCCGGAAAATATTGATTCAATGCATAAGGTAACCCTTGAAGTGAAGGGAGAAACCCAGATGGAGAACCTGGTGGAGAAGCTGAGAGCAGGTGGCATTGCTCACAAGCTGTGGATTGAACAACCTGAGAACATTCCCACTTGTCTTGCTACCAAGCCCTACCCCAAATCCATTGTATCGCCATTCTTCAGAAAGCTCAAGCTCTGCAAGTCATGA 594 51.35 MVSDPNIFPSPHMVTGFSLRPVTSSISHFPPKHRVRFRVSESLSFPIRTPSRLSSKQMSTESAADSNAIVSSDGKAANPDILVQYVVLRRDLIEKWPLGSIVTQGCHASVCAIWAYKDDPHTIEYCSPENIDSMHKVTLEVKGETQMENLVEKLRAGGIAHKLWIEQPENIPTCLATKPYPKSIVSPFFRKLKLCKS* 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1910095 1911341 - Vvi4g195 Vvi4g195 784974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g195 197 CDD PTH2_like 82 195 - -
Vvi4g195 197 Pfam Peptidyl-tRNA hydrolase PTH2 82 195 IPR002833 GO:0004045
Vvi4g195 197 PANTHER PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED 52 196 IPR042237 -
Vvi4g195 197 Gene3D Bit1 80 195 IPR023476 -
Vvi4g195 197 SUPERFAMILY Peptidyl-tRNA hydrolase II 82 195 IPR023476 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g195 K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29] - vvi:100264456 403.675
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g195 . . . . . . . . . Cmo12g00247 . Cma05g00625 . Car12g00279 Sed01g1300 Cpe07g00254 . Bhi04g01087 Tan02g2614 Cmetu03g1754 . Hepe10g0321 . Lcy13g1353 . . . . . . . . . Cone17ag1080 Cone20ag0632 . . . . . . . Bda13g01300 . . . Bma02g00058 . . . . Cma12g00296 . . . . . . . . . . . . . . . . . . . . Chy03g01195 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007204 1 1 1 1 1 0 2 0 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 4 1 1 1 1 1 35