Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g196 ATGGCGGTGGTGAGTGATAGCATGATCGAGAAACTTGCGTCTGCGAGAAGGTCATTGAAGTCAAGCTTGGAGAAATCAAGGGTGCTAGGGTTAGCTCTAGAGAAAAGCGGGCCTAGATTGGAAGAGATTAATCAAAGATTGCCTTCGCTCGAGGCTGCGGTTCGACCTATTCGAGCCCAGAAGGAAGCCCTTGTCGCAGTTGGCGGTCACATCAATCGAGCTGTCAGCCCTGCTGCGGCGGTTCTGAATGTGTTTGATGCTGTTCACGGGCTCGAAAAATCGCTATTGTCCGATCCCCGCAACGATCTTCCGGGTTATCTCTCAGTGTTGAAAAGGCTTGAGGAGGCATTGAAGTTTCTAGGTGATAATTGTGGGTTAGCGATTCAGTGGTTGGAGGATATAGTGGAGTACTTGGAGGATAATTTGGTTGCCGATGAACGGTATCTTTCGAATTTGAAGAAGTCCCTGAAGAATCTCAGGGAATTGCAGAATGATGAAGAGCGAGTTTGCCTCGATGGCGGGTTATTGGAAGCTGCATTGGATAAATTGGAATGTGAATTCCGGCTTCTCTTGACAGAAAACATAATGGTTATACAGAAATTGCAAGCAATCATTGGGAGATTAACTGCAAATAAGAGACTTGAGAAGTGCATTTCTATATATGTTGAGGTTAGGAGTTCCAATGTTAGAGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATTTCGATCTCCGAATTCAATGATGTGCAGAGCATAGAGGGGTACATAGCTCAGTGGGGCAAGCATTTGGAGTTTGCAGTGAAACATTTGTTTGAGGCAGAGTACAAGCTCTGTAATGATGTCTTTGAGCGGATTGGATTGGATGTTTGGATGGGCTGCTTTGCGAAGATAGCTGCACAAGCGGGAATTCTTGCATTTCTTCAGTTTGGGAAGACGGTTACAGAGAGTAAGAAGGACCCTATCAAGCTGTTGAAGCTATTGGATATCTTTGCATCCTTGAACAAGTTGAGATTGGATTTCAACCGCCTTTTTGGTGGAGGGGCATGTATTGAGATCCAAAACCTGACTAGGGATCTCATCAAAAGCATCATTGAGGGGGCGTCTGAGATTTTCTGGGAACTTTTGTTTCAAGTGGAATTACAGAGGCAAACAGCACCCCCTTCAGATGGGAGTGTTCCAAGACTGGTGAGTTTTCTTACTGATTACTGTAATAGGCTACTTGGGGACAATTATAAGCCGATCTTGACACAAGTTCTTGTTATTCACCGAAACTGGAAGCATGAGAAATTCCAAGAAAGACTACTTGTTGATGCCATTTTAAACATCATTAAAGCTATTGAGAAAAACTTAGAAACATGGTCAAAGGGTTATGAGGATGCTACCCTTGCCAATCTTTTTCTGATGAACAATCACTGGCATTTGCATAAACACTTGAAGGGAACAAAGCTTGGAGATCTTCTGGGGGATTCTTGGTTAAAAGAACATGATCAGTCCAAGGACTACTATGCTGCAATATTCCTGAAAGATAGCTGGGGGAAGCTTCCATCCCTCCTAAGTAGGGAAGGTCTGATGCTGTTCTCAGGTGGGCGTGCTACTGCTCGTGATCTTGTCAAGAAAAGGTTGAAATCTTTCAACGAAGCTTTTGATGACATGTATAAGAAACAGTCCAATTGGGTCGTGTCTGAAAGAGATTTGAGGGACAAAACTTGTCAGCTTATAGTGCAGGCAGTTGTTCCAGTCTACCGGAGCTACATGCAAAACTATGGGCCCTTGGTTGAGCAAGACCCAAGTGCTAGTAAGTATGCAAAGTACACTGTACAGACATTGGAGAATATGCTTGCCTCTCTCTTTCAGCCTAAGCCAGCAAAATATGAGGAGGAGGAGGAGCAGAGCCGCAGCGCAGCCGCAGCAGCCATGGAGGTTATGGTGGAGGTGTCTTCGATCCCGGCGTACGTTGGCGGGATGACGCAGGATAAGCAGAGGGAGGAGGAGGTTGGAGGCGGCGTGGTGGTGGGTCGCTTTTCCGGCCAGAGGGACAAAGGGGGGTTTCTGAGTGGATCGGGGAAGAGGGGCGTCGGATCGGAGAAGCCGGAGGAGTCGTCGGAGGCTTCTTCGCTCGGTAATCTCAGCGATGACGAGGACGACGAGGGGGACGACGTCGTTTCATCAAGCGGTGGTGGAGGTAACGACGTCGTATCGGCTAACGCAGGCTTCGCTTCTCTGGGTTCCCTGGAGGACTCTCTTCCCATCAAGAGGGGGTTGTCGAATTGTTTCTCGGGAAGATCAAAGTCGTTTGCGAATCTATCAGACGTGAACACGGTGGCGGATTTGCAGAAGGAAGAGAATCCATTCAACAAGAGGAGAAGAACCCTGATTGCATACAAGCTGTCGAGAAAAAATTCAGGTTTCTACAGTTGGCAAAACCCAAATTCAATGCCTCTTTTGACCCTCAAAGAAGACCCAAATCAAGAGAACAACTCATCAGAAGACGAAGAAGAAGACAGAGAACAAAAACTCCATCAGAGGAAGTTCAAGACCTTCAAATCAACAAGCTGTTTTTCTCTTGCAGATCTGTAA 2583 46.46 MAVVSDSMIEKLASARRSLKSSLEKSRVLGLALEKSGPRLEEINQRLPSLEAAVRPIRAQKEALVAVGGHINRAVSPAAAVLNVFDAVHGLEKSLLSDPRNDLPGYLSVLKRLEEALKFLGDNCGLAIQWLEDIVEYLEDNLVADERYLSNLKKSLKNLRELQNDEERVCLDGGLLEAALDKLECEFRLLLTENIMVIQKLQAIIGRLTANKRLEKCISIYVEVRSSNVRASLQALDLDYLEISISEFNDVQSIEGYIAQWGKHLEFAVKHLFEAEYKLCNDVFERIGLDVWMGCFAKIAAQAGILAFLQFGKTVTESKKDPIKLLKLLDIFASLNKLRLDFNRLFGGGACIEIQNLTRDLIKSIIEGASEIFWELLFQVELQRQTAPPSDGSVPRLVSFLTDYCNRLLGDNYKPILTQVLVIHRNWKHEKFQERLLVDAILNIIKAIEKNLETWSKGYEDATLANLFLMNNHWHLHKHLKGTKLGDLLGDSWLKEHDQSKDYYAAIFLKDSWGKLPSLLSREGLMLFSGGRATARDLVKKRLKSFNEAFDDMYKKQSNWVVSERDLRDKTCQLIVQAVVPVYRSYMQNYGPLVEQDPSASKYAKYTVQTLENMLASLFQPKPAKYEEEEEQSRSAAAAAMEVMVEVSSIPAYVGGMTQDKQREEEVGGGVVVGRFSGQRDKGGFLSGSGKRGVGSEKPEESSEASSLGNLSDDEDDEGDDVVSSSGGGGNDVVSANAGFASLGSLEDSLPIKRGLSNCFSGRSKSFANLSDVNTVADLQKEENPFNKRRRTLIAYKLSRKNSGFYSWQNPNSMPLLTLKEDPNQENNSSEDEEEDREQKLHQRKFKTFKSTSCFSLADL* 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1913810 1923695 - Vvi4g196 Vvi4g196 784975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g196 860 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 9 195 - -
Vvi4g196 860 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 196 626 - -
Vvi4g196 860 PANTHER EXOCYST COMPLEX PROTEIN EXO70 9 195 IPR004140 GO:0000145|GO:0006887
Vvi4g196 860 PANTHER EXOCYST COMPLEX PROTEIN EXO70 196 626 IPR004140 GO:0000145|GO:0006887
Vvi4g196 860 MobiDBLite consensus disorder prediction 674 731 - -
Vvi4g196 860 Pfam Exo70 exocyst complex subunit 260 616 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vvi4g196 860 Gene3D Exocyst complex component Exo70 79 628 - -
Vvi4g196 860 MobiDBLite consensus disorder prediction 809 844 - -
Vvi4g196 860 MobiDBLite consensus disorder prediction 809 824 - -
Vvi4g196 860 Coils Coil 149 169 - -
Vvi4g196 860 SUPERFAMILY Cullin repeat-like 81 619 IPR016159 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g196 Vvi9g974 ECH
Vvi4g196 Vvi9g976 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g196 K07195 - vvi:100254158 1165.21