Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g198 ATGCTCTCTCGCATTATCCACTCAGAGTGGTGTAAAGCTGCATCGACGACGATGCAGCACGTCCATGCTCTCTCGTCTTCTCACGGAACCCTAGCTCTCTCCTCTGGACTTCGCTCTTCCTTTCCTTCATCCGCTACAATACGATGTCGTTTCCCCAGGAAGCTCTCTTCTGATGTTCCCCAAAATCTCTCTCACAAACCAAATCTCAAACGCCTCACTTCACGGATCGTTCAGCTCACTCGCAGGAGACAGCTCGATCAGATTTTTGAGGAAATTGAGATTGCCAAGAGAAGGCATGGGAAGCTGAACACCATTGTGATGAATGCAGTTATGGAGGCTTGTGTCCACTGTGGTGATGTTGATTTAGCTCTGAAGGTCTTTGGTGAGATGACAAAACCAGAGAGCTGTGGGGTTGACAATGTCACATATGGTACACTATTGAAGGGATTGGGTGAGGCACGAAGAATTGATGATGCATTTCAATTACTTGAATCTGTGGAACAAGGTACTGCTGTGGGAAGTCCGGAGTTATCAGCACCTCTTGTATGTAGTCTGCTCAATGCTCTTACTGAAGCAGGAGATCTACGCCGTGCTAATGGTCTTTTGGCACGTTATGGTTCTGTGCTTCATGAAGATGGCAGTCCTTCAATCTTGATGTACAACTTACTAATGAAGGGGTATATAACTGCAGGTTTTCCAATGGCTGCATTATCAGTGCATGATGAAATACTACAACAAGGATTAAAGCCTGATAGGCTCACCTATAATACTCTAATCTTTGCATGTGTGAAGACTGAAAAGTTGGACACCGCAATGCGTTATTTTGAGGAAATGAAGGAAAATGCACAGAAAACCATTGATGTTGATCTTTTCCCGGATGCTATCACTTACACTACATTACTTAAGGGTTTTGGGCATGCCAAGGATCTCCTCTCAGTTCAAAAGATTGTGATGGAAATGAAATCATCCAATAATTTATTTGTTGATCGAACTGCATATACTGCAATAGTTGATGCCTTGCTAAATTGTGGCTCAAGTAAAGGTGCCCTTTGCATGTTTGGAGAAATTATAAAGCGAGCTGGACAAAATTTCAACCTAAGGCCAAAACCTCACCTTTATATTTCTATGATGAGTGCTTTAGCTGCTAGAGGAGATTACAATTTGGTCAAAAGTCTACATAAGCGCATGAGGCCAGATTCTGCTGGAACTATCTCTCCTGCAGTTCAAATAGAGGCTGATCAGCTTCTCATGGAGGCAGCTCTGAATGATGGTCAGGTTGATGCAGCTACACACCATCTTTCAAATATTATTACAAGATGGAAAGGAATATGCTGGAGAAGTCGAGGAGGCATGGTTGCAGTGCGTTTAGAGGCATTGTTGGGCTTCACCAGATCAATGTTCAGTCCTTACCTACTTCCCCAGGTATCACCAGCTGACCCAATTGAGAATATCATGATGCCATTTGAAGAAGCTCGGCCACTACTAGCTACCTTGGACTTGAAAAGAGTAGTGATGCGTTTCTATAAGGATTCAGTTGTGCCTGTTATAGACGACTGGGGCAGCTGTGTGGGGCTATTGCACCGTGAAGATTGTAGAGAGTTGGATGCCCCAGTTTCGACAATGATGAGAAGCCCACCTCCTTGTGTTACAACCACGACATCAATTGGCCGAGTGGCTGATCTAATTTTGGAGAAGAGGAACATTCTTGAGTAG 1713 44.07 MLSRIIHSEWCKAASTTMQHVHALSSSHGTLALSSGLRSSFPSSATIRCRFPRKLSSDVPQNLSHKPNLKRLTSRIVQLTRRRQLDQIFEEIEIAKRRHGKLNTIVMNAVMEACVHCGDVDLALKVFGEMTKPESCGVDNVTYGTLLKGLGEARRIDDAFQLLESVEQGTAVGSPELSAPLVCSLLNALTEAGDLRRANGLLARYGSVLHEDGSPSILMYNLLMKGYITAGFPMAALSVHDEILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMKENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVDALLNCGSSKGALCMFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRPDSAGTISPAVQIEADQLLMEAALNDGQVDAATHHLSNIITRWKGICWRSRGGMVAVRLEALLGFTRSMFSPYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDDWGSCVGLLHREDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKRNILE* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1937939 1949481 - Vvi4g198 Vvi4g198 784977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g198 570 Pfam PPR repeat family 215 264 IPR002885 -
Vvi4g198 570 Pfam PPR repeat family 103 150 IPR002885 -
Vvi4g198 570 SUPERFAMILY CBS-domain pair 502 566 IPR046342 -
Vvi4g198 570 PANTHER OS09G0431600 PROTEIN 30 567 IPR044781 -
Vvi4g198 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 133 IPR002885 -
Vvi4g198 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Vvi4g198 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 169 IPR002885 -
Vvi4g198 570 CDD CBS_pair_SF 504 566 - -
Vvi4g198 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Vvi4g198 570 Pfam Pentatricopeptide repeat domain 289 322 IPR002885 -
Vvi4g198 570 Gene3D Tetratricopeptide repeat domain 288 457 IPR011990 GO:0005515
Vvi4g198 570 Gene3D Tetratricopeptide repeat domain 178 287 IPR011990 GO:0005515
Vvi4g198 570 TIGRFAM PPR: pentatricopeptide repeat domain 219 251 IPR002885 -
Vvi4g198 570 TIGRFAM PPR: pentatricopeptide repeat domain 107 131 IPR002885 -
Vvi4g198 570 TIGRFAM PPR: pentatricopeptide repeat domain 141 165 IPR002885 -
Vvi4g198 570 TIGRFAM PPR: pentatricopeptide repeat domain 254 281 IPR002885 -
Vvi4g198 570 Pfam PPR repeat 332 359 IPR002885 -
Vvi4g198 570 Pfam PPR repeat 373 397 IPR002885 -
Vvi4g198 570 Gene3D Tetratricopeptide repeat domain 49 170 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g198 - - - vvi:100266225 1117.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g198 . . . . . . . . . . . . Car09g00456 . . . Cpe06g00392 . . . . . . . Cla05g01804 Cam05g1926 Cec05g1938 Cco05g2001 Clacu05g1918 Cmu05g1800 Cre05g1926 Cone4ag1857 Cone7ag1764 . . Lsi04g02196 Csa03g04406 . . . . . . . . . . Sed13g2091 . Cmo09g00518 . . . . . . Bhi09g02372 Tan01g3737 Cmetu04g2143 . Hepe01g2090 Mch11g0628 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013021 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28