Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g20 ATGGAAGAAAGAAAAAGGACCATGAAGCTGCACCCGATCATACATCGAGATGTAAAGTCCAGCAACAACTTACTAGACGCTGAGTTCAGCGCGAAAATGGTAGATTTTGGATTAGCCAAGATGTTGGTCAAGAAAGGAGAGCCTGACACCATGTCAGGAGTTGAAGGCTCTTACGGATATATTGCCCCCGAGTATGCTTATACAACAAAGGTGAACAATAAGATCGATGTATATAGCTTTGGAGTAGTTCTGCTTGAGCTGGTGACGAGGAGAGAACCTAATAGCGAGCACATGTGCCTTGTAGAATGGGCATGA 315 44.44 MEERKRTMKLHPIIHRDVKSSNNLLDAEFSAKMVDFGLAKMLVKKGEPDTMSGVEGSYGYIAPEYAYTTKVNNKIDVYSFGVVLLELVTRREPNSEHMCLVEWA* 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 240306 241284 + Vvi4g20 Vvi4g20 784799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g20 104 ProSiteProfiles Protein kinase domain profile. 1 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g20 104 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 11 104 - -
Vvi4g20 104 SUPERFAMILY Protein kinase-like (PK-like) 11 95 IPR011009 -
Vvi4g20 104 Pfam Protein kinase domain 11 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g20 104 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 11 104 - -
Vvi4g20 104 Gene3D Transferase(Phosphotransferase) domain 1 6 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g20 - - K00924 vvi:109122498 179.489
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76609 PF00069 Pkinase 2.70E-20 CL0016 Vvi PK