Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g200 ATGAAAGGTACCCAACTTGGCAGTTTGGAGAAGCCCAAATCTTCAAGACCTTCATCCTTTACTTCTTCAAGTGGAAAAGAAATAATTGGAAGTTCCTCTAATGAGTCAGAAGTCTTAGAGCTCATTCCCCCACCTGGAAAGATTCAGAGAGGGCATCACCCCAAAGCAGACGATACTGAGTCTTCCGAAATCACACCTATGGAAGTGGGTAGCTCTACAAGACATGGTGCAAACGCAAGCAGGTATGGTTTGAGAAATCTAAGATGCAATTCAATTTCTGATGCAATGCCATCATGTTCATCATCTGAATCAAACCTTACTAGAAAGAAGGACATTGGAAAAAAGAGACTTTCTGAAATAGAAAGTAGTTCCTCTGCTAGAGGCAAGAAGAGTGGTGGGCCATCATCAGAATATGGACGGAATTCTATTTCTAGTTATGGTGTCTCCATTTCTGATTCCAGACGATCCAGAAATTGGACTCCTAGCAGGGATAACGGTGTTGCATCCGTTAGGACTCGGAGGTCAATCAATGGTAATACTAGTAGGCCATCATCCTCTAATCAAGGAATTCGAAACAATTTATTGCCGACTGAGCCCTCCATTACAATCCCACAAATGCCCCAACCTGAAATATCTATTGGGGCAAATGATCCCAGCTTTGAGAATTTACATAGTATTATGCCCATAAGTCCCACAGAAGTTGGTATCTCACGCTCTTCAATGAATCGGGATAGCCTGCGACGCTATAACATGGATGGGATTGCAGAGGTATTATTGGCTCTAGAGAGGATTGAGCAAGATGAAGAACTAACATATGAGCAATTACTTGTTCTGGAGACAAATTTGTTCCTTGGTGGCTTAAGCTTCCATGATCAGCACAGAGAGATGAGACTAGATATAGATAACATGTCATATGAGGAATTATTGGCTCTAGAGGAGAAGATGGGTACTGTGAGCACAGCACTTACAGAAGAAGCATTGTCAAAATGCCTTGAGAGAAGCATCTATCACACACTGCCTACAGAACCAGGGACCATGGATTGTGCTGGGGATGGTGATGATGTCAAATGCAGTATTTGTCAGGAAGAGTACATGGTTGGGGATGAAGTGGGGAAATTGCAATGCGAGCATGGGTATCATGTGGCCTGTATACACCAGTGGCTACGGCTGAAGAATTGGTGCCCTGTCTGCAAGGCTTCAGCTGCACTTTAA 1212 43.4 MKGTQLGSLEKPKSSRPSSFTSSSGKEIIGSSSNESEVLELIPPPGKIQRGHHPKADDTESSEITPMEVGSSTRHGANASRYGLRNLRCNSISDAMPSCSSSESNLTRKKDIGKKRLSEIESSSSARGKKSGGPSSEYGRNSISSYGVSISDSRRSRNWTPSRDNGVASVRTRRSINGNTSRPSSSNQGIRNNLLPTEPSITIPQMPQPEISIGANDPSFENLHSIMPISPTEVGISRSSMNRDSLRRYNMDGIAEVLLALERIEQDEELTYEQLLVLETNLFLGGLSFHDQHREMRLDIDNMSYEELLALEEKMGTVSTALTEEALSKCLERSIYHTLPTEPGTMDCAGDGDDVKCSICQEEYMVGDEVGKLQCEHGYHVACIHQWLRLKNWCPVCKASAAL* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1970578 1975867 + Vvi4g200 Vvi4g200 784979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g200 403 SUPERFAMILY RING/U-box 352 400 - -
Vvi4g200 403 MobiDBLite consensus disorder prediction 1 79 - -
Vvi4g200 403 ProSiteProfiles Zinc finger RING-type profile. 357 398 IPR001841 -
Vvi4g200 403 Pfam Ring finger domain 356 398 IPR001841 -
Vvi4g200 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 402 IPR013083 -
Vvi4g200 403 MobiDBLite consensus disorder prediction 1 38 - -
Vvi4g200 403 MobiDBLite consensus disorder prediction 107 123 - -
Vvi4g200 403 MobiDBLite consensus disorder prediction 64 79 - -
Vvi4g200 403 MobiDBLite consensus disorder prediction 124 208 - -
Vvi4g200 403 MobiDBLite consensus disorder prediction 95 208 - -
Vvi4g200 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 47 402 IPR045191 GO:0061630
Vvi4g200 403 SMART ring_2 357 397 IPR001841 -
Vvi4g200 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 47 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g200 - - - vvi:100245643 724.546
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g200 Vvi11g3 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97