Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g205 ATGGCCGCCGATAAGAGCATCGGGCTGGAGGAGATCAAGAACGAGTCCGTGGATCTGGAGCGGATTCCTATAGAGGAAGTGTTTGAGCAGTTGAAATGTAGCAGAGAAGGTCTAACATCAGATGAAGGAGCCAGCCGGCTTCAAATTTTTGGACCAAACAAACTAGAAGAGAAAAAGGAGAGCAAAGTCCTCAAGTTTTTGGGGTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCCGCAGCTATTATGGCTATTGCCTTAGCAAATGGTGGTGGCCAGCCTCCAGATTGGCAAGACTTTGTTGGTATCATTGTTTTACTGTTGATCAACTCCACAATCAGTTTTATTGAAGAAAACAATGCTGGTAATGCAGCAGCAGCCCTAATGGCTGGCCTTGCTCCCAAGACGAAGGTTCTTAGGGATGGACGATGGACTGAGCAGGATGCAGCTATTCTTGTTCCAGGAGACATAATTAGCATTAAATTGGAATCCCTCCCTGTTCTCACTGCGATTGGTAATTTCTGCATTTGCTCTATTGCTGTTGGAATGATTATCGAGATCATTGTCATGTACCCAATACAGCACCGCAAGTACAGGGATGGAATTGACAACTTGCTGGTTCTCTTGATTGGAGGAATTCCTATTGCTATGCCTACTGGTGCAATCACTAAGAGAATGACGGCCATTGAGGAAATGGCAGGCATGGATGTTCTCTGCAGTGACAAGACAGGAACACTGACCTTGAACAAGTTGACTGTTGACAGAAACCTTATTGAAGTGTTTACAAAGGGTGTGGAGAAAGAACACGTGATCCTGCTCGCAGCCAGGGCTTCTAGGATTGAAAATCAGGATGCCATTGATGCTGCCATTGTAGGAATGCTTGCGGATCCGAAAGAGGCACGGGCTGGAATCAGAGAGGTTCATTTCCTTCCATTTAATCCTGTAGACAAGAGGACTGCTCTAACATACATTGATGCTGATGGGACGTGGCACCGAGCTAGCAAAGGTGCCCCGGAGCAGATACTAAACCTTTGCAACTGCAAGGAGGATGTCAGAAAGAAGGTGCATGGAGTGATCGATAAATTTGCTGAACGAGGACTTCGATCTTTAGCTGTTGCTAGACAGGAAGTACCTGAGAAAACAAAAGACGCTCCAGGAGCACCATGGCAGTTTGTTGGTTTGTTGTCTTTGTTTGATCCTCCCAGGCATGATAGTGCAGAAACCATTCGAAGAGCTCTCAACCTCGGTGTCAATGTCAAGATGATCACTGGTGACCAACTTGCCATTGCCAAGGAAACTGGACGAAGGCTTGGAATGGGGACAAACATGTATCCCTCTTCTTCATTGCTTGGCCAAGACAAGGATGCATCCATTGCAGCCCTCCCTGTGGACGAGTTGATTGAGAAGGCCGACGGATTTGCCGGAGTATTTCCTGAACACAAATATGAAATTGTAAAGAAGTTGCAAGAGAGAAAGCACATCTGTGGAATGACAGGAGATGGTGTCAATGATGCCCCCGCTCTGAAGAAGGCAGATATTGGAATTGCTGTTGCTGATGCCACTGATGCTGCCAGAGGTGCTTCTGACATTGTCCTCACTGAACCTGGGCTCAGTGTCATTATAAGCGCAGTGCTGACCAGTAGGGCTATCTTTCAAAGGATGAAGAACTACACTATTTATGCAGTTTCTATCACCATCCGTATTGTGTTTGGTTTCTTGTTTATTGCTCTCATATGGAAGTTTGACTTTGCCCCCTTCATGGTTCTTATTATTGCCATCTTAAACGATGGAACAATCATGACAATCTCAAAGGATCGAGTGAAGCCATCACCACAGCCAGACAGCTGGAAACTGAAAGAAATCTTTGCAACTGGGATTGTGCTTGGAGGTTACTTGGCCCTAATGACTGTTGTATTCTTCTGGGTCATGAAAGATACCGACTTCTTTCCGGAAAAGTTTGGTGTAAAATCAATAAGATATAGCGAACATGAAATGATGGCAGCCTTATACCTACAAGTGAGTATTGTGAGTCAGGCCCTCATTTTCGTGACAAGGTCTCGAAGCTGGTCCTATGTTGAACGCCCTGGGCTTCTCTTAGTCGGTGCTTTCATTGCAGCTCAGCTGGTTGCAACTGTGATATCCGTGTATGCCAACTGGGGTTTCGCAAGGATTAAGGGAACCGGCTGGGGTTGGGCTGGAGTCATCTGGCTGTACAGCGTTGTTACCTATGTTCCACTTGACTTTCTGAAATTTGCCATTCGATACATTCAGAGTGGGAAAGCTTGGGATAATCTTCTGGAAAATAAGACTGCCTTCACTACTAAGAAAGACTATGGAAAAGAAGAGAGGGAAGCACAATGGGCTGCTGCACAAAGGACATTACATGGTCTTCAACCACCTGAAACCAGCAACATTTTCTCTGACAAGAGCGGTTACAGGGAGCTTTCCGAGATTGCAGAGCAAGCCAAACGGCGGGCTGAGGTTGCTAGGCTTCGAGAGCTGAATACACTGAAGGGGCACATGGAGTCGGTGGTGAAGCTGAAAGGATTAGACATTGATACGATTCAACATCACTACACAGTTTAA 2589 45.96 MAADKSIGLEEIKNESVDLERIPIEEVFEQLKCSREGLTSDEGASRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGIIVLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQDAAILVPGDIISIKLESLPVLTAIGNFCICSIAVGMIIEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFTKGVEKEHVILLAARASRIENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDADGTWHRASKGAPEQILNLCNCKEDVRKKVHGVIDKFAERGLRSLAVARQEVPEKTKDAPGAPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVVFFWVMKDTDFFPEKFGVKSIRYSEHEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLVGAFIAAQLVATVISVYANWGFARIKGTGWGWAGVIWLYSVVTYVPLDFLKFAIRYIQSGKAWDNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETSNIFSDKSGYRELSEIAEQAKRRAEVARLRELNTLKGHMESVVKLKGLDIDTIQHHYTV* 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2012452 2019830 - Vvi4g205 Vvi4g205 784984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g205 862 SFLD C1.7: P-type atpase like 222 550 - -
Vvi4g205 862 SUPERFAMILY HAD-like 236 546 IPR036412 -
Vvi4g205 862 Coils Coil 813 833 - -
Vvi4g205 862 PANTHER PLASMA MEMBRANE ATPASE 6 164 - -
Vvi4g205 862 PANTHER PLASMA MEMBRANE ATPASE 168 842 - -
Vvi4g205 862 PANTHER CALCIUM-TRANSPORTING ATPASE 6 164 - -
Vvi4g205 862 PANTHER CALCIUM-TRANSPORTING ATPASE 168 842 - -
Vvi4g205 862 CDD P-type_ATPase_H 37 752 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vvi4g205 862 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Vvi4g205 862 Gene3D - 811 862 - -
Vvi4g205 862 Pfam Cation transporter/ATPase, N-terminus 22 84 IPR004014 -
Vvi4g205 862 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 474 589 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi4g205 862 PRINTS P-type cation-transporting ATPase superfamily signature 240 254 - -
Vvi4g205 862 PRINTS P-type cation-transporting ATPase superfamily signature 394 405 - -
Vvi4g205 862 PRINTS P-type cation-transporting ATPase superfamily signature 416 426 - -
Vvi4g205 862 PRINTS P-type cation-transporting ATPase superfamily signature 499 518 - -
Vvi4g205 862 PRINTS P-type cation-transporting ATPase superfamily signature 522 534 - -
Vvi4g205 862 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 168 717 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vvi4g205 862 Gene3D - 237 536 IPR023214 -
Vvi4g205 862 SFLD p-type atpase 222 550 IPR044492 -
Vvi4g205 862 ProSitePatterns E1-E2 ATPases phosphorylation site. 242 248 IPR018303 -
Vvi4g205 862 Gene3D - 69 150 - -
Vvi4g205 862 Gene3D - 168 726 - -
Vvi4g205 862 Gene3D - 252 399 IPR023299 GO:0000166
Vvi4g205 862 Pfam haloacid dehalogenase-like hydrolase 236 513 - -
Vvi4g205 862 PRINTS H+-transporting ATPase (proton pump) signature 356 374 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi4g205 862 PRINTS H+-transporting ATPase (proton pump) signature 471 487 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi4g205 862 PRINTS H+-transporting ATPase (proton pump) signature 499 515 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi4g205 862 PRINTS H+-transporting ATPase (proton pump) signature 530 555 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi4g205 862 PRINTS H+-transporting ATPase (proton pump) signature 671 692 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi4g205 862 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 758 IPR023298 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g205 K01535 - vvi:100254244 1342.02