Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g205 | ATGGCCGCCGATAAGAGCATCGGGCTGGAGGAGATCAAGAACGAGTCCGTGGATCTGGAGCGGATTCCTATAGAGGAAGTGTTTGAGCAGTTGAAATGTAGCAGAGAAGGTCTAACATCAGATGAAGGAGCCAGCCGGCTTCAAATTTTTGGACCAAACAAACTAGAAGAGAAAAAGGAGAGCAAAGTCCTCAAGTTTTTGGGGTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCCGCAGCTATTATGGCTATTGCCTTAGCAAATGGTGGTGGCCAGCCTCCAGATTGGCAAGACTTTGTTGGTATCATTGTTTTACTGTTGATCAACTCCACAATCAGTTTTATTGAAGAAAACAATGCTGGTAATGCAGCAGCAGCCCTAATGGCTGGCCTTGCTCCCAAGACGAAGGTTCTTAGGGATGGACGATGGACTGAGCAGGATGCAGCTATTCTTGTTCCAGGAGACATAATTAGCATTAAATTGGAATCCCTCCCTGTTCTCACTGCGATTGGTAATTTCTGCATTTGCTCTATTGCTGTTGGAATGATTATCGAGATCATTGTCATGTACCCAATACAGCACCGCAAGTACAGGGATGGAATTGACAACTTGCTGGTTCTCTTGATTGGAGGAATTCCTATTGCTATGCCTACTGGTGCAATCACTAAGAGAATGACGGCCATTGAGGAAATGGCAGGCATGGATGTTCTCTGCAGTGACAAGACAGGAACACTGACCTTGAACAAGTTGACTGTTGACAGAAACCTTATTGAAGTGTTTACAAAGGGTGTGGAGAAAGAACACGTGATCCTGCTCGCAGCCAGGGCTTCTAGGATTGAAAATCAGGATGCCATTGATGCTGCCATTGTAGGAATGCTTGCGGATCCGAAAGAGGCACGGGCTGGAATCAGAGAGGTTCATTTCCTTCCATTTAATCCTGTAGACAAGAGGACTGCTCTAACATACATTGATGCTGATGGGACGTGGCACCGAGCTAGCAAAGGTGCCCCGGAGCAGATACTAAACCTTTGCAACTGCAAGGAGGATGTCAGAAAGAAGGTGCATGGAGTGATCGATAAATTTGCTGAACGAGGACTTCGATCTTTAGCTGTTGCTAGACAGGAAGTACCTGAGAAAACAAAAGACGCTCCAGGAGCACCATGGCAGTTTGTTGGTTTGTTGTCTTTGTTTGATCCTCCCAGGCATGATAGTGCAGAAACCATTCGAAGAGCTCTCAACCTCGGTGTCAATGTCAAGATGATCACTGGTGACCAACTTGCCATTGCCAAGGAAACTGGACGAAGGCTTGGAATGGGGACAAACATGTATCCCTCTTCTTCATTGCTTGGCCAAGACAAGGATGCATCCATTGCAGCCCTCCCTGTGGACGAGTTGATTGAGAAGGCCGACGGATTTGCCGGAGTATTTCCTGAACACAAATATGAAATTGTAAAGAAGTTGCAAGAGAGAAAGCACATCTGTGGAATGACAGGAGATGGTGTCAATGATGCCCCCGCTCTGAAGAAGGCAGATATTGGAATTGCTGTTGCTGATGCCACTGATGCTGCCAGAGGTGCTTCTGACATTGTCCTCACTGAACCTGGGCTCAGTGTCATTATAAGCGCAGTGCTGACCAGTAGGGCTATCTTTCAAAGGATGAAGAACTACACTATTTATGCAGTTTCTATCACCATCCGTATTGTGTTTGGTTTCTTGTTTATTGCTCTCATATGGAAGTTTGACTTTGCCCCCTTCATGGTTCTTATTATTGCCATCTTAAACGATGGAACAATCATGACAATCTCAAAGGATCGAGTGAAGCCATCACCACAGCCAGACAGCTGGAAACTGAAAGAAATCTTTGCAACTGGGATTGTGCTTGGAGGTTACTTGGCCCTAATGACTGTTGTATTCTTCTGGGTCATGAAAGATACCGACTTCTTTCCGGAAAAGTTTGGTGTAAAATCAATAAGATATAGCGAACATGAAATGATGGCAGCCTTATACCTACAAGTGAGTATTGTGAGTCAGGCCCTCATTTTCGTGACAAGGTCTCGAAGCTGGTCCTATGTTGAACGCCCTGGGCTTCTCTTAGTCGGTGCTTTCATTGCAGCTCAGCTGGTTGCAACTGTGATATCCGTGTATGCCAACTGGGGTTTCGCAAGGATTAAGGGAACCGGCTGGGGTTGGGCTGGAGTCATCTGGCTGTACAGCGTTGTTACCTATGTTCCACTTGACTTTCTGAAATTTGCCATTCGATACATTCAGAGTGGGAAAGCTTGGGATAATCTTCTGGAAAATAAGACTGCCTTCACTACTAAGAAAGACTATGGAAAAGAAGAGAGGGAAGCACAATGGGCTGCTGCACAAAGGACATTACATGGTCTTCAACCACCTGAAACCAGCAACATTTTCTCTGACAAGAGCGGTTACAGGGAGCTTTCCGAGATTGCAGAGCAAGCCAAACGGCGGGCTGAGGTTGCTAGGCTTCGAGAGCTGAATACACTGAAGGGGCACATGGAGTCGGTGGTGAAGCTGAAAGGATTAGACATTGATACGATTCAACATCACTACACAGTTTAA | 2589 | 45.96 | MAADKSIGLEEIKNESVDLERIPIEEVFEQLKCSREGLTSDEGASRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGIIVLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQDAAILVPGDIISIKLESLPVLTAIGNFCICSIAVGMIIEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFTKGVEKEHVILLAARASRIENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDADGTWHRASKGAPEQILNLCNCKEDVRKKVHGVIDKFAERGLRSLAVARQEVPEKTKDAPGAPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVVFFWVMKDTDFFPEKFGVKSIRYSEHEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLVGAFIAAQLVATVISVYANWGFARIKGTGWGWAGVIWLYSVVTYVPLDFLKFAIRYIQSGKAWDNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETSNIFSDKSGYRELSEIAEQAKRRAEVARLRELNTLKGHMESVVKLKGLDIDTIQHHYTV* | 863 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2012452 | 2019830 | - | Vvi4g205 | Vvi4g205 | 784984 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g205 | 862 | SFLD | C1.7: P-type atpase like | 222 | 550 | - | - | |
Vvi4g205 | 862 | SUPERFAMILY | HAD-like | 236 | 546 | IPR036412 | - | |
Vvi4g205 | 862 | Coils | Coil | 813 | 833 | - | - | |
Vvi4g205 | 862 | PANTHER | PLASMA MEMBRANE ATPASE | 6 | 164 | - | - | |
Vvi4g205 | 862 | PANTHER | PLASMA MEMBRANE ATPASE | 168 | 842 | - | - | |
Vvi4g205 | 862 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 6 | 164 | - | - | |
Vvi4g205 | 862 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 168 | 842 | - | - | |
Vvi4g205 | 862 | CDD | P-type_ATPase_H | 37 | 752 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Vvi4g205 | 862 | SMART | Cation_ATPase_N_a_2 | 18 | 90 | IPR004014 | - | |
Vvi4g205 | 862 | Gene3D | - | 811 | 862 | - | - | |
Vvi4g205 | 862 | Pfam | Cation transporter/ATPase, N-terminus | 22 | 84 | IPR004014 | - | |
Vvi4g205 | 862 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 474 | 589 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi4g205 | 862 | PRINTS | P-type cation-transporting ATPase superfamily signature | 240 | 254 | - | - | |
Vvi4g205 | 862 | PRINTS | P-type cation-transporting ATPase superfamily signature | 394 | 405 | - | - | |
Vvi4g205 | 862 | PRINTS | P-type cation-transporting ATPase superfamily signature | 416 | 426 | - | - | |
Vvi4g205 | 862 | PRINTS | P-type cation-transporting ATPase superfamily signature | 499 | 518 | - | - | |
Vvi4g205 | 862 | PRINTS | P-type cation-transporting ATPase superfamily signature | 522 | 534 | - | - | |
Vvi4g205 | 862 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 168 | 717 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Vvi4g205 | 862 | Gene3D | - | 237 | 536 | IPR023214 | - | |
Vvi4g205 | 862 | SFLD | p-type atpase | 222 | 550 | IPR044492 | - | |
Vvi4g205 | 862 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 242 | 248 | IPR018303 | - | |
Vvi4g205 | 862 | Gene3D | - | 69 | 150 | - | - | |
Vvi4g205 | 862 | Gene3D | - | 168 | 726 | - | - | |
Vvi4g205 | 862 | Gene3D | - | 252 | 399 | IPR023299 | GO:0000166 | |
Vvi4g205 | 862 | Pfam | haloacid dehalogenase-like hydrolase | 236 | 513 | - | - | |
Vvi4g205 | 862 | PRINTS | H+-transporting ATPase (proton pump) signature | 356 | 374 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi4g205 | 862 | PRINTS | H+-transporting ATPase (proton pump) signature | 471 | 487 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi4g205 | 862 | PRINTS | H+-transporting ATPase (proton pump) signature | 499 | 515 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi4g205 | 862 | PRINTS | H+-transporting ATPase (proton pump) signature | 530 | 555 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi4g205 | 862 | PRINTS | H+-transporting ATPase (proton pump) signature | 671 | 692 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi4g205 | 862 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 18 | 758 | IPR023298 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g205 | K01535 | - | vvi:100254244 | 1342.02 |