Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g208 ATGGAGTGGGACAGCAATTCGGAGGAGGGCAGCGGAGGCGAGGACGAAGAGGGATTCTTGCTCAGTGATGGTGGTCCGCTGCCGTTCTCCGCCGGGAGTTTGCTCGAAACGGCGCCATGTGGGTTTGTGGTGTCCGACGCTTTGGAGCCCGACTTCCCCATTATATATGTGAACACTGGGTTTGAACTCGTTACTGGGTATAGAGCTGAGGAAATTCTGGGTCGGAATTGCCGTTTCCTCCAATGTAGAGGACCTTTTGCTAAAAGAAGACATCAACTGGTGGACTCCACTGTAGTTTCAGAAATTCGTAGATGCCTTGAGCTTGGGGTAGAATTCCAAGGGGATTTATTAAACTTCAGAAAAGATGGGTCTCCATTGATGAACAGACTGCGGCTGACGCCAATTTATGGGGATGACAAAACCATAACCCATGTTATTGGTATTCAGTTCTTTACAGAAGCAAATCTTGATCTGGGGCCGCTTCCGGGATCTGTTACCAAGGAGTCTTACAGATCTTTTGACCGATTCTCTTCTGATCTCATGTCTTCCCGCTCTATTCCATCTGGGAGTGTAAATGCTGGTCATGAAGTTTGTGAGATGTTTCAACTGAGCGATGAAGTATTGTCTCACAAGATACTCTCTCGGTTGACACCTAGGGACATTGCTTCCGTTGCTTCTGTATGTAAACGACTTTATCAGTTAACAAAGAATGAGGATCTTTGGAGATTGGTTTGCCAAAATGCATGGGGCTGTGAAACAACTAGGGTTTTAGAGACAGTGCCTGGGGCAAAGAGACTAGGGTGGGTCCGACTAGCTAGGGAATTAACAACTCTTGAAGCTGCTGCATGGAGGAAGCTAACAGTTGGAGGTGCTGTGGAGCCTTCTCGTTGCAATTTCAGTGCATGTGCTGTTGGGAATCGCGTTGTTCTCTTTGGTGGTGAAGGGGTTAACATGCAACCAATGAATGACACATTTGTATTGGATTTAAATGCTACTAACCCTGAATGGCAACATGTTAAGCATCCTACATGGCGTGAGATTTCAGGATTGGCCCCACCACTTCCCAGATCCTGGCACAGCTCCTGCACTCTGGATGGCACTAAGTTAGTAGTTTCAGGTGGTTGTGCAGACTCTGGAGTCCTTCTCAGTGACACTTTTCTGCTTGATCTTGCAACGATTGAGAAACCTGTCTGGAGAGAGATTCCAGTTGCATGGACCCCACCTTCTCGTTTGGGTCACTCACTCTCGGTTTATGGAGGCAGGAAGATTTTGATGTTTGGCGGTCTAGCCAAGAGTGGGCCTCTTCGGTTCCGCTCCAGTGATGTTTTTACTATGGATCTTAGCGAAGAAGAACCATGCTGGAGATGTGTAACTGGAAGTGGGATGCCTGGTTCTGGAAATCCAGCTGGTACAGCTCCTCCTCCTCGCCTTGATCATGTGGCCGTGAGCCTTCCAGGTGGCAGGATTCTGATCTTTGGTGGTTCTGTAGCTGGTCTTCACTCTGCATCTCAGTCATATCTACTGGACCCAACTGATGAGAAACCTACTTGGAGAATATTAAATGTGCCCGGGCGCCCCCCAAGATTTGCTTGGGGGCATAGTACATGTGTTGTTGGAGGAACAAGAGCTATAGTGCTTGGAGGACAAACTGGAGAGGAGTGGATGCTGAGCGAGCTCCATGAGCTTTCATTGGCGAGTTACGTTGTGTGA 1710 48.3 MEWDSNSEEGSGGEDEEGFLLSDGGPLPFSAGSLLETAPCGFVVSDALEPDFPIIYVNTGFELVTGYRAEEILGRNCRFLQCRGPFAKRRHQLVDSTVVSEIRRCLELGVEFQGDLLNFRKDGSPLMNRLRLTPIYGDDKTITHVIGIQFFTEANLDLGPLPGSVTKESYRSFDRFSSDLMSSRSIPSGSVNAGHEVCEMFQLSDEVLSHKILSRLTPRDIASVASVCKRLYQLTKNEDLWRLVCQNAWGCETTRVLETVPGAKRLGWVRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNATNPEWQHVKHPTWREISGLAPPLPRSWHSSCTLDGTKLVVSGGCADSGVLLSDTFLLDLATIEKPVWREIPVAWTPPSRLGHSLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGSGNPAGTAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQSYLLDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASYVV* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2059972 2064897 + Vvi4g208 Vvi4g208 784987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g208 569 Pfam PAS domain 39 149 IPR000014 -
Vvi4g208 569 Gene3D - 196 244 - -
Vvi4g208 569 ProSiteProfiles PAS repeat profile. 34 76 IPR000014 -
Vvi4g208 569 Gene3D - 469 568 IPR015915 GO:0005515
Vvi4g208 569 Gene3D - 272 468 IPR015915 GO:0005515
Vvi4g208 569 Pfam Kelch motif 477 524 IPR011498 GO:0005515
Vvi4g208 569 Pfam Kelch motif 410 461 IPR011498 GO:0005515
Vvi4g208 569 Pfam F-box-like 210 246 IPR001810 GO:0005515
Vvi4g208 569 SUPERFAMILY F-box domain 187 262 IPR036047 GO:0005515
Vvi4g208 569 CDD PAS 38 148 IPR000014 -
Vvi4g208 569 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 340 - -
Vvi4g208 569 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 340 568 - -
Vvi4g208 569 SUPERFAMILY PYP-like sensor domain (PAS domain) 34 149 IPR035965 -
Vvi4g208 569 Pfam Galactose oxidase, central domain 296 339 - -
Vvi4g208 569 Pfam Galactose oxidase, central domain 355 392 - -
Vvi4g208 569 PANTHER ADAGIO PROTEIN 1-LIKE 340 568 - -
Vvi4g208 569 PANTHER ADAGIO PROTEIN 1-LIKE 1 340 - -
Vvi4g208 569 SMART fbox_2 203 244 IPR001810 GO:0005515
Vvi4g208 569 TIGRFAM sensory_box: PAS domain S-box protein 34 148 IPR000014 -
Vvi4g208 569 Gene3D PAS domain 24 160 - -
Vvi4g208 569 SUPERFAMILY Kelch motif 283 563 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g208 K12115 ZTL; clock-associated PAS protein ZTL - vvi:100249144 745.347
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g208 Vvi9g1022 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g208 . . . . . . . . Cmo05g00672 . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0299 . . . . . . . . . . . . . . . . . . . . Car05g00635 Cpe11g00567 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002995 2 1 2 3 2 2 4 1 2 1 2 1 2 0 1 2 2 2 2 2 1 1 1 1 2 2 1 2 1 2 50