Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g21 ATGAGGACCATGGAAGAAAGAAAAAGGACCATGAAGCTGCACCTGAACATACATCGAGATGTAAAGTCCAGCAACATCTTACTAGACGCTGAGTTCAACGCGAAAATTGTAGATTTTGGATTACCCAAGATGTTGGTCAAGCAAGGAGAGCCCGATACCATGTCAGGAGTTGCAGGCTCTTACAGATATATTGCCCCCGAGTATGCTTATACACCAAAGGTGAAGGAGAAGACCGATGTATATAGCTTTGGAGTAGTTCTTCTTGAGCTGGTGACGGGGAGAGAACCTAACAGCGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAGTTTAGAGAAGGGAAAACCATTGAGGAAGTGGTGGATGAGGAGATCAAAGAACAATGTGACAGAGCACAAGTGACCACTTTCTTCAATCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAGGAGGTTTTGGAAATTCTTCGACTGGATTTCTATTTTTCTGTCATTACTATAGTGGGATTTCAAAGAAATGGGCTTCATTTTTTAAACTTCTTATTACCAGCAGGAGTCCCACTACCGTTAGCACCTTTGTTAGTAGTTCTTGAGCTAATCCCTCATTGTTTTCATGCATTAAACTTAGGAATGCATTTATTTGCTAATATGATGGCCGGTCATACTTCAGTAAAGATTTTAAGTGGAGTTTGCTCGGACTATGCTATGTATGAATGA 735 42.04 MRTMEERKRTMKLHLNIHRDVKSSNILLDAEFNAKIVDFGLPKMLVKQGEPDTMSGVAGSYRYIAPEYAYTPKVKEKTDVYSFGVVLLELVTGREPNSEHMCLVEWAWDQFREGKTIEEVVDEEIKEQCDRAQVTTFFNLGLMCTTTLPSTRPTMKEVLEILRLDFYFSVITIVGFQRNGLHFLNFLLPAGVPLPLAPLLVVLELIPHCFHALNLGMHLFANMMAGHTSVKILSGVCSDYAMYE* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 241462 245778 + Vvi4g21 Vvi4g21 784800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g21 244 Pfam Protein kinase domain 17 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g21 244 Gene3D Transferase(Phosphotransferase) domain 1 11 166 - -
Vvi4g21 244 PRINTS ATP synthase A subunit signature 191 206 IPR000568 GO:0015078|GO:0015986|GO:0045263
Vvi4g21 244 PRINTS ATP synthase A subunit signature 211 233 IPR000568 GO:0015078|GO:0015986|GO:0045263
Vvi4g21 244 SUPERFAMILY F1F0 ATP synthase subunit A 162 237 IPR035908 -
Vvi4g21 244 SMART serkin_6 2 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g21 244 SUPERFAMILY Protein kinase-like (PK-like) 17 162 IPR011009 -
Vvi4g21 244 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g21 244 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 163 - -
Vvi4g21 244 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 17 163 - -
Vvi4g21 244 Pfam ATP synthase A chain 102 236 IPR000568 GO:0015078|GO:0015986|GO:0045263
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76610 PF00119 ATP-synt_A 5.80E-13 No_clan Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g21 - K00924 vvi:109122498 333.183