Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g211 ATGGCAACCCTAACTTGCAACGCATGCAATAAGGAGTTCATCGGCGAATCAGACCAGAAGCTCCATTACAAATCCGATTGGCACCGCTACAATCTCAAACGCAAGATTGCTGGGGTTCCAGGGGTGACTGAAGCGTTATATCTAGCTAGACAGTCTTCCCTTGCTGAAGAGAAAAATCGGTTAAATGAGACCCCCATGCTATATAGTTGCAGCCTTTGCGGCAAGGGATACAGAAGTTCCAAGGCTCTTGGTCAGCATCTTAAATCACGAAGTCACATCTTGCGGGCTTCCCAAAGAGCAAGTCATCAAGATGAAGAAACTACAATAATCAAGCCACTAACTCACCGCACTGCAAATAAGCCTCCCCCACAAAGAGAGCCAGTCAATGAAGAAAGTGAAGATGATGATGATGACGATGATTTTGAGATAAAATTGGATCCAACCTGTTGCTTCATGTGTGACCAAGAGCAGAACACTATAGAACGTTGTATCGTTCACATGCACAAGCAGCATGGGTTCTTCATTCCTGATGTTGAGTATCTGAAGGATCCAAAAGGACTTCTTACTTATCTTGGCCTTAAGGTGACAAGGGATTTTATGTGTCTGTATTGCAATGACGGATGCCATCCTTTCAACAGCTTGGAAGCGGTTAGGAAGCACATGGTGGCAAAAAGTCACTGCAAAGTGCATTATGGTGATGGTGGTGATGATGAGGAAGCAGAACTGGAAGAGTTCTATGATTATAGTAGCAGTTATGTGGATGTCGATGAGAAACAGCTCGTTGCATCTGGTGACATGAACAACACTGTTGAACTTGGATGTGGTGGATCAGAACTCATCATAACTAGAAGAACTGATGGTGGAATATCAACCAAATCACTTGGATCCCGTGAATTTCTGCGCTATTATCGCCAGAAGCCTCGCCCCTCGCCTATGAATGGTGCTGCCATTACTGCTGCATTGGCCTCTAGGTATAGAAGCATGGGGCTGGCAACAGTGCAGTCAAGAGAGCAGATAGTGAGGATGAAGGTGATGAAGCAGATGAATAAATCCGGGGTAGAAGCCATGCGCTCTAAGATTGGTATGAAGAGTAATGTCATCCGAAACCTCCCCAATAATGTCCCATATTAG 1131 45.0 MATLTCNACNKEFIGESDQKLHYKSDWHRYNLKRKIAGVPGVTEALYLARQSSLAEEKNRLNETPMLYSCSLCGKGYRSSKALGQHLKSRSHILRASQRASHQDEETTIIKPLTHRTANKPPPQREPVNEESEDDDDDDDFEIKLDPTCCFMCDQEQNTIERCIVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVTRDFMCLYCNDGCHPFNSLEAVRKHMVAKSHCKVHYGDGGDDEEAELEEFYDYSSSYVDVDEKQLVASGDMNNTVELGCGGSELIITRRTDGGISTKSLGSREFLRYYRQKPRPSPMNGAAITAALASRYRSMGLATVQSREQIVRMKVMKQMNKSGVEAMRSKIGMKSNVIRNLPNNVPY* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2093625 2097352 + Vvi4g211 Vvi4g211 784990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g211 376 SUPERFAMILY beta-beta-alpha zinc fingers 67 100 IPR036236 -
Vvi4g211 376 MobiDBLite consensus disorder prediction 97 111 - -
Vvi4g211 376 PANTHER ZINC FINGER PROTEIN-RELATED 1 137 - -
Vvi4g211 376 PANTHER ZINC FINGER PROTEIN-RELATED 133 376 - -
Vvi4g211 376 SMART ZnF_U1_5 65 99 IPR003604 GO:0003676|GO:0008270
Vvi4g211 376 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Vvi4g211 376 Pfam Zinc-finger double-stranded RNA-binding 5 29 IPR022755 -
Vvi4g211 376 SUPERFAMILY beta-beta-alpha zinc fingers 133 206 IPR036236 -
Vvi4g211 376 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Vvi4g211 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 92 IPR013087 -
Vvi4g211 376 MobiDBLite consensus disorder prediction 93 140 - -
Vvi4g211 376 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Vvi4g211 376 Pfam C2H2 type zinc-finger (2 copies) 150 251 IPR041661 -
Vvi4g211 376 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Vvi4g211 376 Pfam Zinc-finger of C2H2 type 68 92 - -
Vvi4g211 376 PANTHER ZINC FINGER PROTEIN 622 1 137 IPR040025 -
Vvi4g211 376 PANTHER ZINC FINGER PROTEIN 622 133 376 IPR040025 -
Vvi4g211 376 SMART c2h2final6 199 226 IPR013087 -
Vvi4g211 376 SMART c2h2final6 68 92 IPR013087 -
Vvi4g211 376 SMART c2h2final6 4 28 IPR013087 -
Vvi4g211 376 Gene3D Classic Zinc Finger 3 92 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14737 PF12756 zf-C2H2_2 1.00E-25 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g211 K14816 - vvi:100256015 724.931