Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g214 ATGCAGATGTTCTCCAGCCAGTTCGATCCCTTCTCCGGTGGATTCTCGTCATCTCAGTCAACTGATTCCGGCGTTTCGTCGGCCAAAAGTCGTGAAACTCAAGGATTGATCCCAGTGACAGTGAAGCAGATCAGTGAAGCTTCTCATTCCGGTGATGATAAATCCAATTTCCAAATCGACGGTGTGGATGTTACCAATATTACATTGGTTGGAATGGTGTTCGATAAATCTGAAAGGGTTACTGATGTTTCTTTCGCTCTCGATGATGGTACAGGCCGAATAGAGTGTAAAAGATGGGTGAATGAAGCTTTTGACACAAGGGAAATGGAGAACATAAGTGATGGAATTTATGTTCGTCTTAATGGACACCTAAGAAGTTCTGGAGGCAACAGGCAATTGGTTGCCTTTTCAGTGAGGCCTGTGACAAATTTTGATGAGATTGCCTTCCACTTTATTGAGGTCATACATCTCCATCTGAAGAATTCCAAAACACGGCTGCCAAGTGATGCCCTGACTCAGCCTTTGAGTGCCTCTGTGAAGACCGAATCAACTGGATATCAAACCCCATCAAGTCAGTTATCTGCCCAAAGTGTTGATGGAGTCAAAGGACTCGACCAAATGGTTCTTGACTACCTGCAGCAACCTTCAAACTATGATCGAGAAAAGGGCATACACAGGGATGAACTTTCCCAGCAGCTGAAAATTTCTACTGAAAAGATCATGGAATCCATCAGAACTCTTGAAGAGGAAGGGTTGATCTACTCCACAATTGATGAATTTCACTACAAGTCAACCACGAGTGGATGA 807 43.87 MQMFSSQFDPFSGGFSSSQSTDSGVSSAKSRETQGLIPVTVKQISEASHSGDDKSNFQIDGVDVTNITLVGMVFDKSERVTDVSFALDDGTGRIECKRWVNEAFDTREMENISDGIYVRLNGHLRSSGGNRQLVAFSVRPVTNFDEIAFHFIEVIHLHLKNSKTRLPSDALTQPLSASVKTESTGYQTPSSQLSAQSVDGVKGLDQMVLDYLQQPSNYDREKGIHRDELSQQLKISTEKIMESIRTLEEEGLIYSTIDEFHYKSTTSG* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2122616 2125697 + Vvi4g214 Vvi4g214 784993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g214 268 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 3 266 - -
Vvi4g214 268 SUPERFAMILY Nucleic acid-binding proteins 36 163 IPR012340 -
Vvi4g214 268 PIRSF RPA32 2 266 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi4g214 268 Gene3D - 195 267 IPR036388 -
Vvi4g214 268 MobiDBLite consensus disorder prediction 1 32 - -
Vvi4g214 268 Gene3D - 33 165 IPR012340 -
Vvi4g214 268 CDD RPA2_DBD_D 66 159 - -
Vvi4g214 268 Pfam Replication protein A C terminal 156 259 IPR014892 -
Vvi4g214 268 PANTHER REPLICATION PROTEIN A-RELATED 3 266 IPR040260 -
Vvi4g214 268 SUPERFAMILY Winged helix DNA-binding domain 199 265 IPR036390 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g214 K10739 - vvi:100245725 495.352