Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g215 | ATGCCATCCATTAATGGAGCTCGATTAACTACATTTGAGGATTCTGAGAAAGAGAGCGAGTATGGATATGTTCGCAAGGTGTCCGGACCAGTTGTCGTTGCTGATGGAATGGCAGGAGCTGCTATGTATGAACTGGTTCGAGTTGGTTATGACAACCTTATCCTGGAAATTATTCGATTGGAAGGAGATTCAGCTACCATCCAAGTTTATGAAGAAACAGCTGGTTTGATGGTGAACGACCCTGTTTTACGAACACACAAGCCCCTCTCAGTGGAGCTGGGACCTGGAATTTTAGGAAACATTTTTGATGGCATTCAGAGGCCACTGAAGACTATTGCTAAGAGATCTGGTGATGTCTATATTCCTCGTGGTGTTTCTGTCCCAGCCCTTGACAAAGATACACTATGGGAGTTCCAGCCCAAGAAACTAGGTGAAGGAGATCTTTTAACTGGTGGAGACTTGTATGCTTCTGTTTTTGAGAATAGCTTAATGCAACACCATGTTGCACTTCCCCCTGATGCTATGGGAAAGATCACTTACATAGCACCACCTGGTCAATATTCACTAAAGGACACAGTGCTAGAACTTGAGTTTCAAGGTGTCAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTCCGTACACCTAGGCCTGTTGCCTCAAAGCTTGCTGCTGATACACCTCTCCTTACTGGGCAGCGTGTTCTCGATGCTCTCTTTCCCTCAGTCCTGGGTGGGACTTGTGCAATTCCTGGGGCATTTGGCTGTGGGAAAACAGTCATCAGTCAAGCTCTTTCCAAGTACTCTAATTCTGACACTGTGGTTTATGTTGGATGTGGAGAGAGAGGAAATGAAATGGCAGAGGTTCTGATGGATTTTCCTCAACTGACAATGACACTGCCTGATGGGAGAGAAGAATCTGTCATGAAGAGAACTACGCTCGTAGCTAACACTTCTAACATGCCTGTGGCTGCAAGGGAGGCTTCAATTTATACAGGTATCACAATTGCCGAATACTTTAGAGACATGGGTTACAATGTCAGTATGATGGCAGATTCAACATCTCGTTGGGCTGAGGCTTTGCGTGAGATATCTGGAAGACTGGCAGAAATGCCAGCAGACAGTGGTTACCCTGCTTATCTGGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTTAAGTGCCTTGGTGGGCCAGAACGCACAGGTAGTGTCACCATTGTGGGTGCAGTTTCTCCACCAGGTGGAGATTTTTCAGATCCAGTGACATCAGCTACACTTAGTATTGTCCAGGTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCGCATTGGAATCTTTTTATGAACAATATGACCCTGATTTTATTAATATCAGGACAAAGGCTCGTGAGGTGCTGCAAAGAGAAGATGACCTTAATGAAATTGTCCAGCTTGTTGGAAAGGATGCTTTGGCAGAAACGGATAAAATTACACTGGAGACTGCAAAGCTCTTGAGGGAGGACTATCTTGCTCAAAATGCTTTCACACCATATGACAAGTTTTGTCCCTTTTACAAGTCAGTTTGGATGATGAGGAACATTATTCATTTCTATAATTTGGCCAATCAGGCAGTAGAACGAGGAGCTGGTATGGACGGGCAGAAAATAACATACAGCCTCATCAAGCATCGTCTTGGAGATCTTTTCTACCGTCTTGTATCTCAGAAATTTGAAGATCCAGCAGAAGGCGAGGAAGCTCTGGTAGCAAAGTTCACCAAACTAAATGAAGATCTCACCATGGGCTTCCACAACCTTGAGGATGAAGGCCGGTGA | 1872 | 44.71 | MPSINGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGYDNLILEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKLGEGDLLTGGDLYASVFENSLMQHHVALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQYDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAETDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEEALVAKFTKLNEDLTMGFHNLEDEGR* | 624 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2125788 | 2133322 | - | Vvi4g215 | Vvi4g215 | 784994 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g215 | 623 | Gene3D | - | 134 | 205 | - | - | |
Vvi4g215 | 623 | Gene3D | - | 20 | 89 | IPR023366 | - | |
Vvi4g215 | 623 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 202 | 462 | IPR027417 | - | |
Vvi4g215 | 623 | TIGRFAM | V-ATPase_V1_A: V-type ATPase, A subunit | 20 | 611 | IPR005725 | GO:0033180|GO:0046961|GO:1902600 | |
Vvi4g215 | 623 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 232 | 458 | IPR000194 | GO:0005524 | |
Vvi4g215 | 623 | Gene3D | - | 459 | 623 | IPR024034 | - | |
Vvi4g215 | 623 | Gene3D | - | 91 | 457 | IPR027417 | - | |
Vvi4g215 | 623 | Hamap | V-type ATP synthase alpha chain [atpA]. | 19 | 622 | IPR022878 | GO:0046034|GO:0046961 | |
Vvi4g215 | 623 | PANTHER | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A | 4 | 622 | - | - | |
Vvi4g215 | 623 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 449 | 458 | IPR020003 | GO:0005524 | |
Vvi4g215 | 623 | SUPERFAMILY | C-terminal domain of alpha and beta subunits of F1 ATP synthase | 471 | 553 | - | - | |
Vvi4g215 | 623 | CDD | ATP-synt_V_A-type_alpha_C | 475 | 581 | - | - | |
Vvi4g215 | 623 | Pfam | ATPsynthase alpha/beta subunit N-term extension | 102 | 223 | IPR031686 | - | |
Vvi4g215 | 623 | Pfam | ATP synthase alpha/beta family, beta-barrel domain | 25 | 85 | IPR004100 | GO:0046034|GO:1902600 | |
Vvi4g215 | 623 | CDD | ATP-synt_V_A-type_alpha_N | 21 | 87 | - | - | |
Vvi4g215 | 623 | CDD | V_A-ATPase_A | 88 | 460 | - | - | |
Vvi4g215 | 623 | SUPERFAMILY | N-terminal domain of alpha and beta subunits of F1 ATP synthase | 17 | 89 | IPR036121 | GO:0046034|GO:1902600 | |
Vvi4g215 | 623 | PANTHER | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A | 4 | 622 | IPR022878 | GO:0046034|GO:0046961 |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g215 | K02145 | - | vvi:100266369 | 1230.31 |