Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g223 ATGATGGCAGAAACAGCGACGGCAGCATCGGAATCAGCCGAGGAAGTTCCGGTCCGTGAGCTTTGCGTCAATGGCACTTGCGTGAAAACCGATGAATTCGAGGCCAAACTTGATGAAGGCAACATTGAAGAGGCAGAATCTTCTTTGCGAGAGACATTTTCTCTCAGTTCTGAGGATGCAAGAGCTCTTCTTGGGAAATTGGAGTACCAACGGGGCAAAATGGAAGGTGTTCTTCGTGTTTTTGAAGGCATGGATTTTCAAGCTGCTATTCAGAAGCTACTGCCTCCACCTGATGAAAAAACACCTCCTAGAAAGGCCCGGTCTCGCCCTGGATCAATGCAGGCAGTCTCACAACAACCTGCTGGCCCTGTGATTGAAGCCCTGTACTTGAAATCCAAGTGCCTTCAGAAGCTTGGGAGAACAACTGAGGCTGCTGATGAATGTAGAGGTGTGCTTGATGCTGTGGAAAAGATATTCCCTCTAGGCATACCTGAAGTGCTGGCGGAGAAGAAGCTGCAGGAGATACTTAGCCAAGCGGCAGAGCTGCTTCCTGAGCTTTGGAAGCAGGCTGACAACTACAATGAAGTTATGGCCGCCTACAGACGTGCCCTCCTCAGCCAATGGAATCTTGATAATGATTGTTGCGCGAGGATTCAGAAGCGATTTGCAATGTTCTTGCTGTACAGTGGAGTAGAGGCTGGGCCACCAAGTTTAGCTGCTCAGATTGACGGCTCATATGTACCAAGAAACAATCTTGAGGAAGCTATTCTACTGTTAATGATTCTAACCAGGAAATACTATCTTGGGAAGACGAAATGGGATCAATCAGTAATGGACCATCTTGGATTTGCCCTGTCTCTATGCAGGCAGACTTCTGTTTTAGCAAAGAAGTTTGAAGAGGCCATGCCAGGGGTGTTTCCACGTGATGATCGTTGGAAGGCATTGGCTCTTTGCTATGTTGGAGCAGGAGAAAATGGAGTTTCATTGAATCTATTGAGGAAGTCCTTACACAAAGATGAAAATCCAGACGACCTAGTGACACTGCTATTAGCTGCCAAGATATGTAGTGAGGATTCCCTCCTTGCTGCCGAGGGAGTGGAGTATGCACGGAGGGCAATAAGTAATGCTAATGGGGCTGATGAGCATTTAAAAGGAGTCGGTCTTCGTCTGCTGGGGCTCTGCTTAGGAAAGCAAGCTAGAGTTGCTCCCTCTGATTTTGAGAGGTCTCGTCTTCTGTCTGAGGCGTTGAAGTCACTGGATGGGGCAATAGCTTTGGAGCAAAACAACCCGGATTTGATCTTTGAGTTGGCAGTTCAGTATGCAGAGCACAGGAACTTGAGTGCTGCTTTGCACTATGCCAAGCAGTTCACTGATGCAACAGGAGGGTCCATGGAAAAAGGCTGGAGATTACTCGCTGTGGTCTTGTCCGCTCAACAGCGATATCCCGAGGCAGAAGTGGTCATTGATGCTGCTTTGGATGAGACTGCAAAATGGGAGCAGGGGCCGCTGCTCAGACTGAAAGCCCAGCTGAAGATTGCTCAGTCGTTACCAATGGATGCTATTGAAATCTATCGGTACCTCCTTGCACTAGTTCAAGCACAAAAGAATTCTTTTGGAATCTGGAATGGCCTTGCAAATCTGTACTCCAGCCTTTCACGTTGGAAAGATGCAGAGATATGCTTGGGGAAAGCTATAGAGCTGAAAGATTACTCTGTGGAATCACTGCACCAAAAAGGTGTTATAAGTGAAGGATGTGGCCAAGTAGAAGAAGCTATGAAAGATTATGTTGATGCAATTCTGCTAGATCCGGATTATGTTCCTTGCTTAGTTTTGCTGAGTGCCCTGATGGCGAGGACAAGTACAAAGATGTTGCCTGTTGCCAGAAGCTTACTCTCAGATGCATTGAAGCTACAGCCCACCAACTCTATGGCATGGTATTTCCTGGGAGTGGTTCATAAGAACGATGGGAGAATAGCTGATGCCACAGACTGCTTCCAAGCTGCCTCGATTCTTGAAGAGTCTAATCCCATTGAACGCTTTGGTTCTATGCTGTAA 2055 47.3 MMAETATAASESAEEVPVRELCVNGTCVKTDEFEAKLDEGNIEEAESSLRETFSLSSEDARALLGKLEYQRGKMEGVLRVFEGMDFQAAIQKLLPPPDEKTPPRKARSRPGSMQAVSQQPAGPVIEALYLKSKCLQKLGRTTEAADECRGVLDAVEKIFPLGIPEVLAEKKLQEILSQAAELLPELWKQADNYNEVMAAYRRALLSQWNLDNDCCARIQKRFAMFLLYSGVEAGPPSLAAQIDGSYVPRNNLEEAILLLMILTRKYYLGKTKWDQSVMDHLGFALSLCRQTSVLAKKFEEAMPGVFPRDDRWKALALCYVGAGENGVSLNLLRKSLHKDENPDDLVTLLLAAKICSEDSLLAAEGVEYARRAISNANGADEHLKGVGLRLLGLCLGKQARVAPSDFERSRLLSEALKSLDGAIALEQNNPDLIFELAVQYAEHRNLSAALHYAKQFTDATGGSMEKGWRLLAVVLSAQQRYPEAEVVIDAALDETAKWEQGPLLRLKAQLKIAQSLPMDAIEIYRYLLALVQAQKNSFGIWNGLANLYSSLSRWKDAEICLGKAIELKDYSVESLHQKGVISEGCGQVEEAMKDYVDAILLDPDYVPCLVLLSALMARTSTKMLPVARSLLSDALKLQPTNSMAWYFLGVVHKNDGRIADATDCFQAASILEESNPIERFGSML* 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2193001 2196242 + Vvi4g223 Vvi4g223 785002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g223 684 SUPERFAMILY TPR-like 37 486 IPR011990 GO:0005515
Vvi4g223 684 ProSiteProfiles TPR repeat profile. 642 675 IPR019734 GO:0005515
Vvi4g223 684 MobiDBLite consensus disorder prediction 92 119 - -
Vvi4g223 684 Pfam Tetratricopeptide repeat 573 604 IPR019734 GO:0005515
Vvi4g223 684 Pfam Tetratricopeptide repeat 436 494 - -
Vvi4g223 684 ProSiteProfiles TPR repeat profile. 572 605 IPR019734 GO:0005515
Vvi4g223 684 SUPERFAMILY TPR-like 468 675 IPR011990 GO:0005515
Vvi4g223 684 Gene3D Tetratricopeptide repeat domain 33 214 IPR011990 GO:0005515
Vvi4g223 684 PANTHER PROTEIN NPG1 12 683 IPR043376 -
Vvi4g223 684 Gene3D Tetratricopeptide repeat domain 283 467 IPR011990 GO:0005515
Vvi4g223 684 SMART tpr_5 125 158 IPR019734 GO:0005515
Vvi4g223 684 SMART tpr_5 465 498 IPR019734 GO:0005515
Vvi4g223 684 SMART tpr_5 572 605 IPR019734 GO:0005515
Vvi4g223 684 SMART tpr_5 642 675 IPR019734 GO:0005515
Vvi4g223 684 SMART tpr_5 538 571 IPR019734 GO:0005515
Vvi4g223 684 Gene3D Tetratricopeptide repeat domain 468 679 IPR011990 GO:0005515
Vvi4g223 684 PANTHER PROTEIN NPG1 12 683 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g223 K21843 - vvi:100257836 1303.5