Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g224 ATGGCCGTTTTGAGTTCCTCACTCTCAGCATTCTTCATCAAAAAACTCGTACACCCATCAAAACCCACTTCAATTTTCTCACATTATTCAACTCACCCGCATCTCTCTGCCATGAATTTCCCTCCAAGATCCAAACCCGGTTCAGCAGCTTCTGCAACAACCTCTGAGGTTCCTGACCTGCCCTCCAATGAAATGGGCAAGATTGTAGAGCAGACTTTTCAAAGGTACTCATCTTCTGATGAGGCCAAGAGGAATGGTAGTGGGGTTGCCATTGTTTGGTTCAGAAATGATCTGAGGGTTCTGGATAATGAGGCTTTGGTCAAAGCTTGGGCTTCTTCTCAGGCTGTGTTGCCTGTGTACTGTGTTGATCCAAGGCTTTTTGGCACCACCCATTACTTTGGGTTCCCTAAAACTGGAGCCTTGAGGGCACAATTTCTCATAGAATGCTTGGCTGACTTGAAAAGGAATCTCATGAACCGAGGGCTGAACTTGCTCATTCAACATGGGAAACCCGAGGAAATTCTCCCTTCTCTTGCAAAAACCTTTGAAGCCCACACGGTGTATGCACATAAAGAAACTTGTAGTGAGGAGCTGAATGTCGAGCGACTGGTTAGAAATGGTCTGCGACAAGTGGTGTTGCCACCATCTCCTGGGCAATCCACCAGCCTGAGTTCCTCAAACCACCCAAAATTACAGCTTATCTGGGGTAGTACCATGTACCATATAGAGGACCTTCCTTTCAGTACCAGCAGTTTACCAGATGTCTACACTCAGTTCCGCAAGTCCGTTGAATCCAAGTGCACAATCCGGATATGCATTAGAACTCCAACATTGCTCGGGCCACCACCAAACATAGAGGACTGGGGAAGCGTTCCTTCCATCGACCAGCTTGGACTCCATGAGGAAAAGGTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGAGTAAATGAGTATTTCTGGAAGAAGGATTTGCTGAAGGTCTATAAAGCAACAAGGAATGGGATGTTGGGGGCTGATTACTCTACCAAATTCTCTCCATGGCTTGCTTCAGGAAGCCTCTCCCCCCGGTTCATATACCAAGAGGTAAAGAGATATGAGAAAGAGAGGCAAGCAAACGATTCCACATACTGGGTGTTGTTTGAATTGATATGGAGAGATTACTTCAGGTTCCTGTCAGTTAAATACAGAAATTCTCTTTTTCATCTAGGTGGACCGAGAAAAGTGGAGGCTAGATGGAGCCAAGACCAGACCATGTTCGAAGCTTGGAGAGATGGTTGTACAGGGTACCCTCTCATAGATGCTAATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAGATTGTATGCTCTTTTCTCGTTCGAGACATGGGCATTGACTGGCGTATGGGAGCTGAATGGTTTGAGACTTGCCTCCTCGATTACGACCCTTGTTCCAATTATGGAAATTGGACCTATGGAGCAGGTGTTGGGAATGACCCAAGAGAAGATCGCTATTTCAGCATCCCAAAGCAAGCAAAGACGTATGATCCTGAAGGGGAGTATGTAGCATTCTGGTTGCCAGAGTTACAAGCACTTCCAAATGATAAGAGGAACTTTCCTGGGAAATCATACATTAACCAAATTGTACCTCTCAAATTTGGCAACATTACTAGCAGTGGTGACAAGGACTCAGCCTCAGCAAGACGAACTGCCTTCAGAGGAAAACAGAGAAAAGGGCATATGAGATAG 1761 46.17 MAVLSSSLSAFFIKKLVHPSKPTSIFSHYSTHPHLSAMNFPPRSKPGSAASATTSEVPDLPSNEMGKIVEQTFQRYSSSDEAKRNGSGVAIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSVESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSRGMRFIGGEAAALSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEARWSQDQTMFEAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFPGKSYINQIVPLKFGNITSSGDKDSASARRTAFRGKQRKGHMR* 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2199113 2209197 + Vvi4g224 Vvi4g224 785003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g224 586 PANTHER CRYPTOCHROME 74 562 IPR002081 -
Vvi4g224 586 Pfam DNA photolyase 90 268 IPR006050 -
Vvi4g224 586 Gene3D HUPs 52 236 IPR014729 -
Vvi4g224 586 TIGRFAM crypto_DASH: cryptochrome, DASH family 89 533 IPR014133 GO:0003913|GO:0006281
Vvi4g224 586 Gene3D - 237 406 - -
Vvi4g224 586 PANTHER CRYPTOCHROME DASH 74 562 - -
Vvi4g224 586 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 308 544 IPR036134 -
Vvi4g224 586 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 407 561 - -
Vvi4g224 586 MobiDBLite consensus disorder prediction 37 62 - -
Vvi4g224 586 PRINTS DNA photolyase signature 433 449 IPR002081 -
Vvi4g224 586 PRINTS DNA photolyase signature 453 471 IPR002081 -
Vvi4g224 586 PRINTS DNA photolyase signature 492 506 IPR002081 -
Vvi4g224 586 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 88 221 IPR006050 -
Vvi4g224 586 MobiDBLite consensus disorder prediction 564 586 - -
Vvi4g224 586 Pfam FAD binding domain of DNA photolyase 386 543 IPR005101 -
Vvi4g224 586 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 87 285 IPR036155 -
Vvi4g224 586 MobiDBLite consensus disorder prediction 46 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g224 K25656 cry, CRYD; cryptochrome - vvi:100252689 1201.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007699 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36