Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g227 ATGTTGGAGAAGGAGGGGCATTCGAAAATTAGCAAGTCTACTCATCTACCTCGGAAGCGATTCTACCGAGCACGAGCTCACAGTAATCCACTGAGTGACTCTCATTTCCCGGTCCCGATTTCCCCTTCTCATGTCGACTATTCTTTTGCGGATGTTGGTTGCGGTTTTGGAGGGCTTCTAATTAGTCTTTCCACCCTCTTCCCTGAGACTCTGATGATTGGGATGGAAATTAGGGATAAGGTGACGGAGTACGTCAAGGAACGGATCTTGGCCTTGAGGGTGGCAAACCCGGGTCAGTACCAGAATGTGTCAGTGGTTCGGACTAATTCTATGAAATACATCCCGAATTACTTTGGTAAAGGGCAGCTTTCGAAGATGTTCTTCCTGTTCCCTGACCCTCACTTCAAAGAGAAGAACCATCGTCGCAGGGTGATTAGCACACACTTGCTAGATGAGTATGCATATGTTCTTGAGGCAGAACTTGAAGGAGATCCAGTGGTAAAGCTCTTGAGTTCTGCTACAGAGGAAGGGCAAAAGGTTGCTAGGAATGGGGGACAGACTTTCCAAGCGGACTCGCAAGCAGACAAGGATAAATTAGAACCGGGAAGATCTTCTTTTTTAATTTCTCGGGTGACACTAGACAATCAGGTATGCCAACTCATGAGGCAGTTACAAGTTCTTTTTTCTTTGTCTTCTATGAATCTATTATCTATCGTTGTTTGTTCTATTCATGCCAATCTATTATCTAAAGTTGTTTGCTCTATCACCTCTATTCATGTCATGGGTTTCTTATTTGAAAAGGTTTTGGTTTTCATATACTGGCTTATTGATTGA 834 43.76 MLEKEGHSKISKSTHLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSFADVGCGFGGLLISLSTLFPETLMIGMEIRDKVTEYVKERILALRVANPGQYQNVSVVRTNSMKYIPNYFGKGQLSKMFFLFPDPHFKEKNHRRRVISTHLLDEYAYVLEAELEGDPVVKLLSSATEEGQKVARNGGQTFQADSQADKDKLEPGRSSFLISRVTLDNQVCQLMRQLQVLFSLSSMNLLSIVVCSIHANLLSKVVCSITSIHVMGFLFEKVLVFIYWLID* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2241931 2243881 - Vvi4g227 Vvi4g227 785006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g227 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 157 IPR029063 -
Vvi4g227 277 ProSiteProfiles SAM-dependent methyltransferase TRMB-type domain profile. 12 224 IPR003358 GO:0006400|GO:0008176
Vvi4g227 277 PANTHER TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE 9 159 IPR025763 GO:0008176
Vvi4g227 277 PANTHER TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE 159 190 IPR025763 GO:0008176
Vvi4g227 277 PANTHER 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE 9 159 IPR003358 GO:0006400|GO:0008176
Vvi4g227 277 PANTHER 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE 159 190 IPR003358 GO:0006400|GO:0008176
Vvi4g227 277 Hamap tRNA (guanine-N(7)-)-methyltransferase [METTL1]. 16 195 IPR025763 GO:0008176
Vvi4g227 277 Gene3D Vaccinia Virus protein VP39 35 160 IPR029063 -
Vvi4g227 277 Pfam Putative methyltransferase 48 159 IPR003358 GO:0006400|GO:0008176
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g227 K03439 trmB, METTL1, TRM8; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] - vvi:100247530 355.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g227 . . . . . . . . . . . . . . Sed01g1290 . . Bhi04g01134 Tan02g2586 Cmetu03g0727 . Hepe10g0338 . Lcy13g1382 . . . . . . . . . . . . . . Cme03g01721 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01242 Cam08g1700 Cec08g1280 Cco08g1401 Clacu08g1396 . Cre08g1182 Lsi08g01104 Csa02g02294 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006205 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 37