Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g23 ATGACAAGTTCAGTTCATAACTTCGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATTGGACCTGCAAAAGGCCTATGCCACATGCATGAATACTGTTCTGTCCCAATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAAAGCGAAAATTGTGGATTTTGGATTGGCTAAGACGTTGGTCAAGCAAGGAGAACCCAACACCATGTCAGGAATTGTAGGCTCTTACAGGTATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACAAGAAGATCGATGTATATAGCTTTGGAGTAGTCTTGCTTGAGCTTGTGACGGGAAGAGAACCCAACAATGGGGACGAGCACATGTGCCTTGCAGAATGGGCATTGGATCAGTTTAGAGAAAGGAAAACCATTGAGGAAGTGGTAGACGAGGAGATCAAGGAACAATGTGATAGAGCACAAGTGGCCACTCTCTTCAAACTAGGCATTAGGTGCACTAACAAATTACCATCCAATAGGTCCACAATGAAAGAGACCATCACAAAGAAAATTCCGGCCAGAATTTGTGACCTCAAGAACCTAATCGTACTTGACGTCTCCTACAATTACATTCCAGGCGAGTTCCCGGATATTCTCAATTGCTCTAAGCTCGAATATCTCCTCTTGTTGCAAAACTCCTTCTTCAACGGCACCTGGCCAACGGAGATTGGTAATTTGTCAAATCTTGAACAATTGGCCATGGCCTATAATGACAAATTCCGGCCTTCAGCCCTTCCAAAGGACTTCAACAATCTATCGAGTCTGGAACTCTTGGACCTCTCAAACAACAAATTGGAAGCTCTCAACTTGAAAGAAATTGATCTTTCCGACAACCATTTGACGGGGTCCATACCAGCGGGTTTCGGGAAGCTACAAAATTTGACGGGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACACTTGAAACTTTCAAAGTTTTTAGCAATCAATTGATGGTCGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCACGTCCCTCGGGAATTGCACAAGTTTGCTCACCATTCAACTTTCCAACAATCGTTTTTCAGGCGGGATTCCTTCCGGCATCTGGACATCCCCGGACATGGTATCGGTGATAGTGGAGATCGCTAACAACAACAACAATATGTTGTCTGGAAAAATTCCAGTGGAATTGACCAGTCTTTGGAACATCACTGTTCTGTTGCTTGATGGGAATCAATTCTCGGGTGAACTTCCATCCCAGATCATCTCATGGAAGTCGCTCAATAAGTTAAATCTCTCAAGAAACAAACTTTCTGGCCTAATTCCCAAGGCATTAGGTTCTTTAACTAGCCTTAGTTACCTCGACCTGTCAGAAAACCAGTTCTCAGGTCAAATTCCTCCTGAACTTGGCCATTTGAACCTTATTATCCTCCATCTTTCGTCCAACCAACTTTGTGTGTCAATGTTCCCACTTTGA 1521 43.79 MTSSVHNFVLDWPTRLQIAIGPAKGLCHMHEYCSVPIIHRDVKSSNILLDAEFKAKIVDFGLAKTLVKQGEPNTMSGIVGSYRYIAPEYAYTTKVNKKIDVYSFGVVLLELVTGREPNNGDEHMCLAEWALDQFRERKTIEEVVDEEIKEQCDRAQVATLFKLGIRCTNKLPSNRSTMKETITKKIPARICDLKNLIVLDVSYNYIPGEFPDILNCSKLEYLLLLQNSFFNGTWPTEIGNLSNLEQLAMAYNDKFRPSALPKDFNNLSSLELLDLSNNKLEALNLKEIDLSDNHLTGSIPAGFGKLQNLTGLNLFWNQLSGEIPANISLIPTLETFKVFSNQLMVASNNNLSGEVPTSLGNCTSLLTIQLSNNRFSGGIPSGIWTSPDMVSVIVEIANNNNNMLSGKIPVELTSLWNITVLLLDGNQFSGELPSQIISWKSLNKLNLSRNKLSGLIPKALGSLTSLSYLDLSENQFSGQIPPELGHLNLIILHLSSNQLCVSMFPL* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 279750 299210 + Vvi4g23 Vvi4g23 784802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g23 506 SUPERFAMILY L domain-like 190 500 - -
Vvi4g23 506 SUPERFAMILY Protein kinase-like (PK-like) 9 181 IPR011009 -
Vvi4g23 506 Gene3D Transferase(Phosphotransferase) domain 1 1 178 - -
Vvi4g23 506 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g23 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Vvi4g23 506 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 181 229 - -
Vvi4g23 506 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 181 - -
Vvi4g23 506 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 344 395 - -
Vvi4g23 506 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 278 343 - -
Vvi4g23 506 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 229 280 - -
Vvi4g23 506 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 398 500 - -
Vvi4g23 506 Pfam Leucine rich repeat 417 476 IPR001611 GO:0005515
Vvi4g23 506 Pfam Protein kinase domain 23 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g23 506 SMART LRR_typ_2 267 290 IPR003591 -
Vvi4g23 506 SMART LRR_typ_2 306 330 IPR003591 -
Vvi4g23 506 SMART LRR_typ_2 463 487 IPR003591 -
Vvi4g23 506 SMART LRR_typ_2 439 462 IPR003591 -
Vvi4g23 506 Gene3D Ribonuclease Inhibitor 283 499 IPR032675 -
Vvi4g23 506 Gene3D Ribonuclease Inhibitor 179 282 IPR032675 -
Vvi4g23 506 Pfam Leucine Rich Repeat 284 306 IPR001611 GO:0005515
Vvi4g23 506 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 344 395 - -
Vvi4g23 506 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 1 181 - -
Vvi4g23 506 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 229 280 - -
Vvi4g23 506 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 278 343 - -
Vvi4g23 506 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 398 500 - -
Vvi4g23 506 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 181 229 - -
Vvi4g23 506 SMART serkin_6 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g23 506 PRINTS Leucine-rich repeat signature 270 283 - -
Vvi4g23 506 PRINTS Leucine-rich repeat signature 463 476 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76612 PF00069 Pkinase 7.20E-29 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g23 - K00924 soe:110787391 394.815