Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g230 ATGGGATGGGGAAACATCTACAGACGGCGTGTGAAAGTATTCACAGTAGCTTTTATAATCTACCTGGATTATAAGGCTTTACAGCAAAGAGAGAAATGGAGTAGCAAATCTAAAAAAGCCGCTCTATGGGAAAGGGCTCATGAACGCAATGCTAAACGTGTGCTTAATTTGATAGTAGAGTTGGAAGGTTTGTGGGTAAAACTCGGACAGTACTTATCTACACGTGCAGATGTGCTTCCTGAGGCCTATATATCCCTTCTCAAGCAGTTACAAGATTCTCTTCCTCCTCGGCCTTTGAAAGAGGTATGTCGGACTATAGAGAAGGAGTTAGGGAAATCCATGGATGATCTATTCTCGAGTTTTGTTGATGCTCCTCTGGCGACAGCGTCAATAGCTCAAGTTCATCGTGCAACTCTGAGAAGTGGGGAAGATGTGGTTGTTAAAGTTCAACATGAGGGCATCAAGACAGTCATATTGGAGGACTTAAAGAATGCAAAGTCAATAGCTGACTGGATAGCATGGGCAGAACCACAATATGACTTCAACCCTATGATTGATGAATGGTGCAGAGAAGCACCTAAAGAACTTGATTTTGATCATGAAGCTGAAAACACTAGAAAAGTCTCCAGAAATCTAGGCTGCAAAAACAAGAATGATGTCATGCCTGGCAATCAAGTGGATGTGTTGATTCCAGAAATTATTCAGTCAACTGAAAAAGTCCTCATTTTAGAGTATATGGATGGGGTTCGTTTGAATGACTGTGAATCACTGAAAGCTTTTGGTATTGACAAACAAAAGCTTGTTGAAGAAATAACTCGTGCATATGCCCACCAGATTTACGTTGATGGATTTTTTAATGGTGACCCCCACCCTGGAAATTTTCTTGTCAGCAAGGAACCTCCACATCGTCCAGTTTTGCTTGACTTTGGGCTTACAAAGTCACTATCAAGCTCTATGAAACAAGCACTAGCGAAATTGTTTCTGGCATCTGCAGAGGGGGATCATGTGGCTCTTTTGTCTGCCTTATCAGAAATGGGACTTAGGTTGCGCCTTGACCTGCCAGATCAGGCGATGGAAGTAGCAACTGTATTTTTCCGTTCTTCAACACCAGCTAGTGAAGCTCTTGAAAACATGAGATCTTTGTCTAAGCAACGAACGAAGAACATGAAAGTCATACAGGAAAAGATGAAACTCAATAAAAAAGAAGTTAAACGCTTTAATCCCGTGGATGCATTTCCAGGGGATATTGTGATATTCGCACGGGTTCTTAATCTTCTTAGAGGGCTTTCAACCATAATGGATGTTCGCATCAGCTATTTAGATATCATGAGACCATTTGCTGAATCTGTTCTACAAGGATACATTAACAAGGGACCAGCAGTGAATTCACAATGGATATATGATACACCTGTCCATTCGGATGTAGAGACAAAGCTAAGGCGCCTCCTAGTTGAGCTGGGGAATGATGATAAAATACTGGGAATTCAGGTATGTGCCTACAAAGATGGGGAGGTTATTATTGATACTGCTGCTGGAGTGCTTGGAAGATATGATCCTCGTCCAGTTCAACCTGATAGCCTATTTCCTGTTTTCTCCGTAACAAAGGGTATTACAGCAGGAATGATACATTGGCTGGTTGACAAAGGGAAACTGAAGCTTGGGGAGAGTATTGCAAATATTTGGCCAGAATTTGGATCAAATAAAAAGGAGCTAATAAAGGTCCATCATGTGCTTACACATACATCTGGTTTGCAAAACGCCTTGGGTGATATTTCAAGAGAAAATCCTTTGTTGATGTGCGAGTGGGATGAATGTTTAAATCGCATTGCTATGTCAGTCCCTGAGACTGAACCTGGTCATGAGCAGTTATATCATTATTTATCTTTTGGCTGGCTGTGTGGTGGAATTATTGAGCATGCTTCTGGGAAGAAATTCCAGGAGATACTAGAAGAAGCATTTATTCGCCCCCTCCAGATTGAAGGCGAGCTATATCTTTCTTTTCTCCTCTTCAGGTGTGGAATCTCGACTTGCAACTCTCACAGTGGATACTGA 2052 41.72 MGWGNIYRRRVKVFTVAFIIYLDYKALQQREKWSSKSKKAALWERAHERNAKRVLNLIVELEGLWVKLGQYLSTRADVLPEAYISLLKQLQDSLPPRPLKEVCRTIEKELGKSMDDLFSSFVDAPLATASIAQVHRATLRSGEDVVVKVQHEGIKTVILEDLKNAKSIADWIAWAEPQYDFNPMIDEWCREAPKELDFDHEAENTRKVSRNLGCKNKNDVMPGNQVDVLIPEIIQSTEKVLILEYMDGVRLNDCESLKAFGIDKQKLVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKEPPHRPVLLDFGLTKSLSSSMKQALAKLFLASAEGDHVALLSALSEMGLRLRLDLPDQAMEVATVFFRSSTPASEALENMRSLSKQRTKNMKVIQEKMKLNKKEVKRFNPVDAFPGDIVIFARVLNLLRGLSTIMDVRISYLDIMRPFAESVLQGYINKGPAVNSQWIYDTPVHSDVETKLRRLLVELGNDDKILGIQVCAYKDGEVIIDTAAGVLGRYDPRPVQPDSLFPVFSVTKGITAGMIHWLVDKGKLKLGESIANIWPEFGSNKKELIKVHHVLTHTSGLQNALGDISRENPLLMCEWDECLNRIAMSVPETEPGHEQLYHYLSFGWLCGGIIEHASGKKFQEILEEAFIRPLQIEGELYLSFLLFRCGISTCNSHSGY* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2271264 2281988 + Vvi4g230 Vvi4g230 785009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g230 683 PANTHER ABC1 FAMILY PROTEIN 1 667 - -
Vvi4g230 683 SUPERFAMILY beta-lactamase/transpeptidase-like 477 661 IPR012338 -
Vvi4g230 683 SUPERFAMILY Protein kinase-like (PK-like) 91 313 IPR011009 -
Vvi4g230 683 Pfam ABC1 atypical kinase-like domain 89 339 IPR004147 -
Vvi4g230 683 PANTHER ABC1 FAMILY PROTEIN 1 667 - -
Vvi4g230 683 CDD ABC1_ADCK3-like 89 342 - -
Vvi4g230 683 Gene3D - 475 667 IPR012338 -
Vvi4g230 683 Pfam Beta-lactamase 480 658 IPR001466 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g230 K08869 ADCK, ABC1; aarF domain-containing kinase - vvi:100242392 1318.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g230 . . . . . Bpe02g00276 . . . . Cma01g01591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00003 . . . . . . . Cmo01g01639 . Cma09g00545 . . . . Cpe02g00386 . . . . . . . . . . . . . . . Csa02g02327 . Cme04g00310
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008509 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35