Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g231 ATGAAAATACTTTTTAAAATCATTGTCAAACCGACTCTAAAAATCGCAATCCTTTATTTGGTACGTACTGTGCTTTCTCTCCTTCGAGTATATAACTCGATTAGCCTCCTCACTTGCCCTCCCTTTTCTCTCCCTCTCTTCTCAAATTCTCACTATTTTCTTCCTTCGTCCCTAAGAAACCTCCGCTCACCGGAGCCGCCTCCACCTCCGATGGACCACAAACCGCTTCGACACGACGTTGTTTCGCATCAATCCACGACCGATTCCATGAAGCGAAGCAACTCCGAGCTGGACTTTCAGGAGTTCGTCCGGCTCCCGATCTCTCCTGTTGCGGTCGACAACGGAGCTCCGACCTCCAAGCCCGAAATTCGGTCTCCGAAAGCCAGGACTTTCCCGGAACCGGTTGTGCTTTTCGGCGTCGACGAGGACAAAACCTTTGAGGATGTTTGCGCCGGCGATTTCAGCTTCGCTCTCAAGTATGGGGACGCAATGACTGGCTTTTCAGGTTGTGGGGGACTCACGGATCTTCCCTGGTATCAAAACCCCACCCCCAGGAATTCCAGTGTGACAGCTACCATTGATTCCCAGTCCTCCATCTGTGTTGGAACTCCAACTTCATGTAATAAGGCTTTGGGCACAGAAAATCAAGCAAGGGGGGCGACCAGTGGTTCTTCCAGGGAGCTATCAGATGATGAAGACATCGACACAGAGTCTGGTCCATGTGAGGAGAGCACAGATCCTAATAATTTGAAGCGCATGAGAAGGATGGTTTCGAACCGGGAATCTGCCAGGAGATCAAGAAAAAGAAAGCAAGCCCACTTGGCTGATCTTGAGTTGCAGGTTGAACAACTGAGAGGAGAAAATGCATCTCTATACAAGCAGCTAACTGACGCTAGTCAACAGTTCGGTGACGCCAATACAAATAACAGAGTACTTAAATCGGATGTTGAAGCTCTGAGAGCTAAGGTGGAGTTAGTTGAAGGCATGGTTGCTCGAGGCTCCGTCACCAGTAGCCTGAACCATATCCTTCAAACCCATTTGAGCTCACCCCAACTCCTCAGTACTCATAATCTCTGCCGGGTGGCTAATGTCTCACCAACAATCACTGTCCGTGGAGACGACGCCTCATATTCTGGAATGACAATTTCTGGGCATAATTCAGCCGCTCTTGGACTTGAAAATGCTGAAATCCGCAATAGCGAAATCAAGAACAGAGTTATGAGTGATGGTGTGAGCTGTGCTTCAGAGATTTGGCCTTGA 1260 48.89 MKILFKIIVKPTLKIAILYLVRTVLSLLRVYNSISLLTCPPFSLPLFSNSHYFLPSSLRNLRSPEPPPPPMDHKPLRHDVVSHQSTTDSMKRSNSELDFQEFVRLPISPVAVDNGAPTSKPEIRSPKARTFPEPVVLFGVDEDKTFEDVCAGDFSFALKYGDAMTGFSGCGGLTDLPWYQNPTPRNSSVTATIDSQSSICVGTPTSCNKALGTENQARGATSGSSRELSDDEDIDTESGPCEESTDPNNLKRMRRMVSNRESARRSRKRKQAHLADLELQVEQLRGENASLYKQLTDASQQFGDANTNNRVLKSDVEALRAKVELVEGMVARGSVTSSLNHILQTHLSSPQLLSTHNLCRVANVSPTITVRGDDASYSGMTISGHNSAALGLENAEIRNSEIKNRVMSDGVSCASEIWP* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2283622 2287194 - Vvi4g231 Vvi4g231 785010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g231 419 SUPERFAMILY Leucine zipper domain 251 300 IPR046347 GO:0003700|GO:0006355
Vvi4g231 419 Coils Coil 260 301 - -
Vvi4g231 419 Gene3D - 250 303 - -
Vvi4g231 419 MobiDBLite consensus disorder prediction 210 224 - -
Vvi4g231 419 PANTHER BASIC LEUCINE ZIPPER 63 85 419 - -
Vvi4g231 419 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
Vvi4g231 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 301 IPR004827 GO:0003700|GO:0006355
Vvi4g231 419 CDD bZIP_plant_GBF1 252 302 IPR045314 GO:0003700|GO:0006355
Vvi4g231 419 Pfam bZIP transcription factor 249 297 IPR004827 GO:0003700|GO:0006355
Vvi4g231 419 SMART brlzneu 247 311 IPR004827 GO:0003700|GO:0006355
Vvi4g231 419 MobiDBLite consensus disorder prediction 210 248 - -
Vvi4g231 419 PANTHER BASIC LEUCINE ZIPPER 9 85 419 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14739 PF00170 bZIP_1 1.50E-12 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g231 K25784 - vvi:100264680 696.427