Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi4g233 | ATGAATGATCTGATGACAAAATCGTTCATCAGCTATGTGGATCTGAAGAAGGAAGCCATGAAGGACTTGGAAGCGGGTCCTGAATATGATCTGCAGATGTCCGGAACCCAGATGGACAGGAACCTGGGTTTGTTCTTGGAGGAGGCCGAGAAGGTGAAGCAGGAGATGGGTTTGATTAGAGAGATTTTGGGGAGGCTGCATGAGGCCAATGAAGAGAGCAAAGCCATCAAGTCTCAGCTCGAGGAGATGGACCGCGCCAATGCTGCTAATATGAGGCTCTCAGGTTACAAAGAGGGTACTCCGGTGTACAGGACTAGGGCTGCGGTCACGAATGGGCTGAGGAAGAAGCTCAAGGAGCTGATGATGGACTTTCAGGGGCTGAGGCAGAGGATGATGACGGAGTACAAGGAGACGGTGGGGAGGCGGTATTTTACAGTGACAGGGGAGTACCCTGATGAGGAGGTGATAGAGAAGATTATATCGAATGGGGAAGGGGGTGAGGAGTTTTTGGGGAGGGCGATACAGGAGCATGGAAGAGGGAAGGTGTTGGAGACAGTGGTGGAGATACAGGACAGGCATGACGCGGCTAAGGAGATAGAGAAGAAATCTCAAGACTGCCAAAGACTACCAGAGGAGCAGCAGGAAGTGCATGTGTTTGGGTGTTATACTTCTGCTGATACTAATTCTTATAGTGGTCATCCCCATTGCTACCAGTTTTAG | 720 | 50.42 | MNDLMTKSFISYVDLKKEAMKDLEAGPEYDLQMSGTQMDRNLGLFLEEAEKVKQEMGLIREILGRLHEANEESKAIKSQLEEMDRANAANMRLSGYKEGTPVYRTRAAVTNGLRKKLKELMMDFQGLRQRMMTEYKETVGRRYFTVTGEYPDEEVIEKIISNGEGGEEFLGRAIQEHGRGKVLETVVEIQDRHDAAKEIEKKSQDCQRLPEEQQEVHVFGCYTSADTNSYSGHPHCYQF* | 240 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2303749 | 2304814 | + | Vvi4g233 | Vvi4g233 | 785012 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi4g233 | 239 | Coils | Coil | 66 | 89 | - | - | |
| Vvi4g233 | 239 | CDD | SynN | 45 | 173 | IPR006011 | GO:0016020 | |
| Vvi4g233 | 239 | PANTHER | SYNTAXIN-RELATED PROTEIN KNOLLE | 74 | 201 | - | - | |
| Vvi4g233 | 239 | PANTHER | SYNTAXIN-RELATED PROTEIN KNOLLE | 4 | 76 | - | - | |
| Vvi4g233 | 239 | SMART | SynN_4 | 37 | 136 | IPR006011 | GO:0016020 | |
| Vvi4g233 | 239 | Pfam | Syntaxin | 70 | 206 | IPR006011 | GO:0016020 | |
| Vvi4g233 | 239 | Gene3D | - | 38 | 212 | - | - | |
| Vvi4g233 | 239 | SUPERFAMILY | t-snare proteins | 44 | 202 | IPR010989 | GO:0016020|GO:0016192 | |
| Vvi4g233 | 239 | PANTHER | SYNTAXIN | 4 | 76 | IPR045242 | - | |
| Vvi4g233 | 239 | PANTHER | SYNTAXIN | 74 | 201 | IPR045242 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi4g233 | K08486 | - | vvi:100254385 | 380.948 |