Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g234 ATGGACGGCGTCAAGCCAGTTGCTTCGGCTGAGCAAGGAGGTGCTGTTGAAGCTCGATTTACAGAGTTCTGCAAGAATGGGTTACAATTGGATGAGAGCACTTTCGCACAAGCTATGAAGCTGTTTGAGGAAAGCAATCACCTACTGTCTACTACAAGCCTGTCTGCAATTGGGAATGGGCCAGAAGATTCTGAACGGTATTGGTTTGCATTCATTTTGTATTCCGTCAAGAGATTGAGTGAAGGGACTGCAGAAAATGTTCAGCAAGGGAATGATGAAAATGGGTTTAATTTGTGCCAGATTTTGAGGGTTTCAAAGCTCAACATTGTCGATTTCTTCAAAGAGCTTCCACAGTTCATCGTCAAGGTTGGTCCAATTCTTGGAAATCTATATGGCCCCGATTGGGAGAAAAGGCTTGAGGCAAAGGAGTTGCAGGCCAATTTTGTGCACTTGAGTATTCTAAGCAAGTACTATAAGCGTGCATACCTGGAATTCTTCTCCACAAGTGGTTCCAACCTTGATAAGCAGTCGTCTGTTATCAGTGCTTCAGGCTATGTGTCAGACTATCATCGGTTTGGATGGTTACTGTTTTTGGCGTTACGTGTTCACGCATTTAGTCGATTTAAGGACCTAGTGACTTGCACAAATGGCTTGGTTTCTATATTGGCCATCCTGATACTTCACGTGCCTATTTCCTTCAGAAGTTTCACTATCAACAACTATCCACGTTTTGTTAAGAAAGGCAATAAAGGTATGGATCTGCTTGCATCCCTTTGTGACATTTATGAGACATCAGAAGATGAAGTAAGAAAAACAATGGAGCAGACCAACAAAGTAATAGTCGATATCTTGAAGAAGAAACCTTGTTTGGCATCAGAGTGTAAATCTGAAAACTTAGCGAGTATTGACCCAGATGGCTTGGTTTATTTTGAAGATCTAATGGACGAATCATCTTTATCATCCAGTATAAATATTCTAGAGAAGGATTATGATGCTGCAATTCGTAATAAGGGTGAACTGGATGAGAGGGTATTCATTAATGGGGAGGATAGCTTACTTGGCTCAGGGAGTTTGTCTGGCGGTGCCATGAGTATAAGTGGTGCCAAGAGGAAAATTGATTCACTGGCCTCCCCAGCAAAGACAATTACAAGTCCGCTGTCTCCCAACCGCTCGCCTGGCATTCTTGGTGGTGCTAACTCAAAGATGGCACCGACACCTGTGACCACAGCTATGACTACTGCAAAGTGGCTCCGGACGGTTATTTCTCCGCTTCCATCAAAGCCCTCTGCCGAACTGGAGCGATTCCTAACATCATGTGACAAGGATGTTACTAGTGATGTGATCCGCAGGGCTAACGTAATATTGGAGGCCATTTTTCCAAGTATTGCTTTTGGAGAGCGTTGTGTCACTGGAAGTGCGAGTCTGATGGACAGCATATGGGCACAACAAAGAAGAATGGAAGCAATGAAGTTATACTATAGGGTGTTGGAAGCAATGTGTACCGCTGAAGCTCAAGTTTTGCATGCAAATAATTTAACCTCCTTATTAACCAATGAGAGGTTCCATAGGTGTATGCTTGCTTGTTCTGCAGAGCTGGTTTTGGCTACCCATAAGACAGTTACAATGTTGTTCCCTGCAGTATTGGAGAGAACTGGCATCACAGCTTTTGATCTTAGCAAGGTGATAGAAAGTTTCATTAGACATGAGGAGTCTCTTCCAAGGGAATTGAGGCGTCATCTTAATTCCTTGGAAGAGCGACTTTTGGAAAGCATGGTATGGGAGAAGGGCTCCTCTATGTATAATTCTTTGATAGTTGCGAGGGCAGCCCTTTCGGCAGAAGTAAACCGGCTTGGATTATTAGCAGAACCTATGCCATCTTTGGATGCTATTTCCATGCATATTAATGCTTCCTGTGGTGGCTTGCCTCCTGTGCCTTCTTTGCAGAAGCGTGAGAGTTCACCAGGTCAGAATGGAGATATTCGGTCCCCAAAGAGAGTGTGCCCTGATTATCGAAGTGTGTTGGTGGAACGGAATTCTTTTACGTCCCCAGTAAAGGATCGCTTCCTGGCATTAAATAATCTCAAGTCCAAGTTACCGCCTCCCCCCTTGCAATCTGCATTTGCAAGTCCAACACGGCCAAATCCAGGACGCGAAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAGATAATAAAGTTAGCTGCTGTCAGAATTAATGGTATGGTTGAGAGGCTACAACTGTCTCAACAGATGCGAGAGAATGTGTACTGTCTTTTCCAACAAATCCTTAATCGGCGAACGAGTCTCTTCTTTAACCGGCATATTGATCAGATCATCCTCTGTTGTTTCTATGGGCTTGCAAAGATCTCTCAAATGAACCTGACCTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGAAAAACAGGGAAGGAACATGTTGATATTATCACATTTTACAATGAAATTTTTATTCCGGCTGTAAAGCCGCTGTTAATGGAGATTGGGCCTGGTGGTGGAACAACTACAAAAACTAACAGGGTTCCTGAAGTTAACAATAACAATGATGCTCAATGTCCTGAATCACCAAAGATTTCTCCTTTTCCAAGTCTTCCTGACATGTCTCCGAAGAAAGTATCCGCTGCACACAATGTCTATGTCTCCCCATTGCGGTCATCTAAGATGGATGCTTTAATCTCACATAGTTCTAAAAGTTACTATGCTTGTGTTGGAGAGAGTACTCATGCTTATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGTACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGTTAGCGACTCCTTGGTGGCCAAAAGCCTGTACCTTCAAAATGGGAGCTGTGCATCCTCATCAGGTGCACCGTTGAAATTAGAGCAACCTGACACGTAG 3021 43.73 MDGVKPVASAEQGGAVEARFTEFCKNGLQLDESTFAQAMKLFEESNHLLSTTSLSAIGNGPEDSERYWFAFILYSVKRLSEGTAENVQQGNDENGFNLCQILRVSKLNIVDFFKELPQFIVKVGPILGNLYGPDWEKRLEAKELQANFVHLSILSKYYKRAYLEFFSTSGSNLDKQSSVISASGYVSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPISFRSFTINNYPRFVKKGNKGMDLLASLCDIYETSEDEVRKTMEQTNKVIVDILKKKPCLASECKSENLASIDPDGLVYFEDLMDESSLSSSINILEKDYDAAIRNKGELDERVFINGEDSLLGSGSLSGGAMSISGAKRKIDSLASPAKTITSPLSPNRSPGILGGANSKMAPTPVTTAMTTAKWLRTVISPLPSKPSAELERFLTSCDKDVTSDVIRRANVILEAIFPSIAFGERCVTGSASLMDSIWAQQRRMEAMKLYYRVLEAMCTAEAQVLHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARAALSAEVNRLGLLAEPMPSLDAISMHINASCGGLPPVPSLQKRESSPGQNGDIRSPKRVCPDYRSVLVERNSFTSPVKDRFLALNNLKSKLPPPPLQSAFASPTRPNPGREGETCAETGINIFFSKIIKLAAVRINGMVERLQLSQQMRENVYCLFQQILNRRTSLFFNRHIDQIILCCFYGLAKISQMNLTFREIIHNYRKQPQCKPQIFRSVFVDWSSARRNGKTGKEHVDIITFYNEIFIPAVKPLLMEIGPGGGTTTKTNRVPEVNNNNDAQCPESPKISPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSTRKLRGALNFDDVEGLVSDSLVAKSLYLQNGSCASSSGAPLKLEQPDT* 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2304859 2312434 - Vvi4g234 Vvi4g234 785013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g234 1006 SMART DUF3452_2 79 228 IPR024599 -
Vvi4g234 1006 Gene3D - 189 347 - -
Vvi4g234 1006 SUPERFAMILY Cyclin-like 725 895 IPR036915 -
Vvi4g234 1006 MobiDBLite consensus disorder prediction 643 664 - -
Vvi4g234 1006 Coils Coil 323 343 - -
Vvi4g234 1006 Pfam Retinoblastoma-associated protein B domain 727 854 IPR002719 GO:0005634|GO:0051726
Vvi4g234 1006 Gene3D - 690 897 - -
Vvi4g234 1006 SUPERFAMILY Cyclin-like 413 605 IPR036915 -
Vvi4g234 1006 Pfam Retinoblastoma-associated protein A domain 405 603 IPR002720 GO:0005634|GO:0051726
Vvi4g234 1006 Gene3D - 408 593 - -
Vvi4g234 1006 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 12 993 IPR028309 GO:0006357|GO:0051726
Vvi4g234 1006 SMART RB_A_2 405 603 IPR002720 GO:0005634|GO:0051726
Vvi4g234 1006 Pfam Domain of unknown function (DUF3452) 89 228 IPR024599 -
Vvi4g234 1006 PANTHER BNACNNG22930D PROTEIN 12 993 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14740 PF01858 RB_A 6.10E-66 CL0065 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g234 K04681 - vvi:100261011 1931.76