Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g238 ATGAGGATAGAAGAGGATGGAGATCGTGTCTCTGCGTCCAGGCAGCATCTGGTCTTTGCTTACTATGTCACTGGCCACGGCTTCGGCCATGCCACTCGTGTTGTTGAGGTTGTTCGGCACCTCATTCTTGCAGGACATGATGTTCATGTTGTTTCTGCAGCCCCAGACTTTGTTTTTACTTCTGAAGTACAGTCCCCTCGGCTCTTCATTCGCAAGGTATTGCTAGACTGTGGAGCTGTTCAAGCCGATGCATTGACAGTGGATCGGCTTGCCTCCCTGGAGAAGTATTCTGAGACAGCTGTGGCACCTCGAGCTTCTATTTTGGCAACAGAAATAGAGTGGCTGAACTCCATCAAGGCTGACTTAGTGGTTTCTGATGTTGTTCCTGTTGCATGCCGTGCAGCAGCTGATGCAGGAATTCGGTCTGTTTGTGTCACTAACTTCAGTTGGGACTTCATATATGCTGAGTATGTAATGGTGGCTGGAAATCATCATCGTTCAATAGTTTGGCAGATAGCAGAGGATTATTCTCATTGTGAATTTCTAATCCGCCTTCCAGGATACTGCCCAATGCCTGCTTTCCGTGATGTTATTGATGTGCCTCTTGTTGTGAGGAGGTTGCATAAATCCCGAAAGGAGGTGAGGAAGGAGCTTGGAATTGGGGAGGATGTGAAGCTAGTTATCTTCAATTTTGGTGGACAGCCAGCAGGCTGGAAGTTAAAGGAGGAGTACTTGCCTTCTGGTTGGCTTTGCCTGGTATGTGGTGCTTCTGACAAGGATGAACTTCCTCCAAATTTTCTGAGGCTTGCAAAAGATGTGTATACACCTGATCTTATAGCAGCATCTGATTGTATGCTTGGAAAAATTGGATATGGCACTGTAAGTGAAGCTCTGGCGTTCAAGTTACCATTTGTCTTTGTTCGTAGAGATTATTTCAATGAGGAACCATTTTTGAGAAATATGCTTGAGTACTATCAAGGTGGCGTTGAGATGATTAGGAGAGATTTGCTCACTGGTCATTGGTTACCTTACCTTGAACGTGCCATTAGTTTGAAACCATGCTATGAGGGTGGCATTGATGGTGGTGAGGTGGCAGCTCGAATATTGCAGGATACTGCTATAGGAAAAAACTATGCATCAGATAAGTTTAGTGGTGCAAGGAGACTGCGAGATGCAATAGTTCTTGGCTATCAACTGCAAAGGGCACCTGGTAGAGATGTCTGCATCCCTGATTGGTATGCAAATGCTGAAAATGAACTTGGTCTGCGTACTGGATTGCCAACCATTGAAATGAACGATGATAGCTCCCTCATGAATTCGTGCACCGAAGACTTTGATATTCTTCATGGAGATGTTCAGGGCCTTTCAGATACAATGAATTTCTTAAAGAGCTTGGTGAAATTGGATGCTGCTTATGACTCCGGAAAGGATACTGAGAAGCGTAAGATACGGGAGCGAGTTGCTGCTGCTGGACTGTTCAATTGGGAGGAAGAAATCTTTGTAGCAAGAGCCCCTGGAAGGTTGGATGTAATGGGAGGTATTGCAGACTATTCAGGAAGCCTTGTTTTGCAGATGCCTATTAGAGAAGCCTGCCATGTTGCTGTTCAAAGAAACCATCCAAGCAAGCAGAGGCTCTGGAAACATGCCCAGGCTCGGCAGCATGCAAAGGGACAAGGACCAACACCTGTTCTGCAAATTGTATCATATGGGTCAGAATTGAGTAACCGTGGTCCAACCTTTGACATGGATTTATCCGATTTCATGGATGGAGATCAGCCAATGTCATATGAGAAGGCAAAAAAATATTTTGCCCAAGATCCATCACAAAAGTGGGCAGCATATGTTGCAGGGTCGATCCTGGTTTTAATGACAGAATTAGGTGTTCGCTTTGAAGACAGTATCAGCATGCTGGTTTCTTCTGCAGTCCCCGAAGGCAAGGGTGTTTCTTCTTCGGCATCTGTGGAGGTTGCTAGCATGTCTGCTATTGCTGCTGCTCATGGACTGAACATCAGCCCAAGAGATCTTGCTTTACTCTGCCAAAAGGTAGAGAACCACATTGTTGGAGCTCCATGTGGTGTAATGGATCAGATGACTTCAGCATGCGGTGAAACCAATAAACTTCTTGCAATGATCTGCCAGCCTGCTGAGGTAGTAGGACATGTGGAAATTCCTGGCCATATACGATTCTGGGGAATTGATTCAGGAATACGGCACAGTGTTGGAGGTGCAGACTATGGATCTGTGAGAATTGGTACATTTATGGGTCGAAAGATGATAAAGTCCATGGCAGCTGCAGTGTTGTCCAGATCATTGCCAAGTTCTAATGGGATAAGTCATTATGAGTTGGAAGAGGAAGGCGGGGAACTACTTGAAGCGGAAGCTTCGTTAGATTATTTATGCAACCTTGCACCTCATAGATATGAAGCTCTTTACGCTAAGATGCTTCCTGAATCCATGCTTGGTGAGACATTTTTGGAGAGGTATGCTGACCACAATGATTCAGTCACTGTAATTGATCACAAGCGGAGTTATGGAGTGAGAGCAAATGCTAGACATCCCATTTACGAAAATTTCCGAGTGAAGGCCTTCAAAGCACTACTCACTTCTGCAGCATCGGATGAGCAACTTACTTCTCTTGGAGAACTTCTGTATCAGTGCCACTACAGTTACAGTGATTGTGGGCTCGGATCAGATGGGACAGATAGGCTTGTACAATTGGTCCAGGAAATGCAGCACAATAAAGTGTCTAAATTTGAAGATGGAACCTTATATGGGGCAAAGATCACTGGAGGGGGCTCTGGTGGAACAGTTTGTGTGATAGGCAGGAACTGCCTAAGGAGCAGCCAACAAATCCTCGAGATTCAGCAGAGATACAAAGGCGCAACGGGCTATTTACCTCTGGTGATTGAGGGCTCATCACCAGGTGCAGGGAAGTTCGGTTATCTGAGAATCCGCCGTCGATTCCCTCCAAAGCAGAGTGTCGTCTCTCTTCAAAGCAACTACAATTGA 3009 45.63 MRIEEDGDRVSASRQHLVFAYYVTGHGFGHATRVVEVVRHLILAGHDVHVVSAAPDFVFTSEVQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRASILATEIEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMVAGNHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIGEDVKLVIFNFGGQPAGWKLKEEYLPSGWLCLVCGASDKDELPPNFLRLAKDVYTPDLIAASDCMLGKIGYGTVSEALAFKLPFVFVRRDYFNEEPFLRNMLEYYQGGVEMIRRDLLTGHWLPYLERAISLKPCYEGGIDGGEVAARILQDTAIGKNYASDKFSGARRLRDAIVLGYQLQRAPGRDVCIPDWYANAENELGLRTGLPTIEMNDDSSLMNSCTEDFDILHGDVQGLSDTMNFLKSLVKLDAAYDSGKDTEKRKIRERVAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNHPSKQRLWKHAQARQHAKGQGPTPVLQIVSYGSELSNRGPTFDMDLSDFMDGDQPMSYEKAKKYFAQDPSQKWAAYVAGSILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNISPRDLALLCQKVENHIVGAPCGVMDQMTSACGETNKLLAMICQPAEVVGHVEIPGHIRFWGIDSGIRHSVGGADYGSVRIGTFMGRKMIKSMAAAVLSRSLPSSNGISHYELEEEGGELLEAEASLDYLCNLAPHRYEALYAKMLPESMLGETFLERYADHNDSVTVIDHKRSYGVRANARHPIYENFRVKAFKALLTSAASDEQLTSLGELLYQCHYSYSDCGLGSDGTDRLVQLVQEMQHNKVSKFEDGTLYGAKITGGGSGGTVCVIGRNCLRSSQQILEIQQRYKGATGYLPLVIEGSSPGAGKFGYLRIRRRFPPKQSVVSLQSNYN* 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2344161 2361062 + Vvi4g238 Vvi4g238 785017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g238 1002 PRINTS Mevalonate kinase family signature 504 528 - -
Vvi4g238 1002 PRINTS Mevalonate kinase family signature 640 662 - -
Vvi4g238 1002 PRINTS Mevalonate kinase family signature 683 702 - -
Vvi4g238 1002 PRINTS Mevalonate kinase family signature 925 942 - -
Vvi4g238 1002 SUPERFAMILY Ribosomal protein S5 domain 2-like 497 716 IPR020568 -
Vvi4g238 1002 Gene3D - 832 962 IPR036554 -
Vvi4g238 1002 Pfam GHMP kinases N terminal domain 637 702 IPR006204 GO:0005524
Vvi4g238 1002 Gene3D - 490 730 IPR014721 -
Vvi4g238 1002 Gene3D Glycogen Phosphorylase B; 208 350 - -
Vvi4g238 1002 Gene3D Glycogen Phosphorylase B; 11 163 - -
Vvi4g238 1002 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 23 342 - -
Vvi4g238 1002 PIRSF Gal_kin_glcsltr 1 989 IPR012369 -
Vvi4g238 1002 Pfam Galactokinase galactose-binding signature 496 537 IPR019539 -
Vvi4g238 1002 PANTHER MEVALONATE KINASE/GALACTOKINASE 17 985 - -
Vvi4g238 1002 Pfam GHMP kinases C terminal 874 959 IPR013750 -
Vvi4g238 1002 PANTHER L-ARABINOKINASE 17 985 - -
Vvi4g238 1002 SUPERFAMILY GHMP Kinase, C-terminal domain 727 978 IPR036554 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g238 K12446 E2.7.1.46; L-arabinokinase [EC:2.7.1.46] - vvi:100267958 1980.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g238 Vvi11g809 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g238 . . . . . . Bma04g00357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma09g00543 . . . . . . . . . . . . . . . . . . . . . . Cme04g00314
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003094 1 4 1 1 1 2 2 2 2 2 2 2 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 1 1 2 52