Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g24 ATGTTGGTCAAGCAAGGAGAGCCAGACACCATGTCAGGAATTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACAAGAAGATCGATGTATATAGCTTTGGAGTAGTCTTGCTTGAGCTTGTGACGGGGAGAGAACCCAACAATGGGGACGAGCACGTGTGCCTTGCAGAATGGGCATGGGATCAGTTCAGAGAAGAGAAAACCATTGAGGAAGTGATGGATGAGGAGATCAAGGAAGAATGTGATAGAGCACAAGTGGCCACTCTCTTCAAACTAGGCATTAGGTGCACTAACAAATTACCATCCAATAGGCCCACAATGAAAGGGGTTTTGAAAATTCTTCAACAGTGCAGTCCTCAAGAGGGCCATGGAAGAAATAAAAAGGACCATGAAGAAAGTCAAGGTAAACGAAACCATCATATTCTTCAACTTGCAGCCAACCAAATATGTTCAAGTCCATTCAATACATTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACACTGGAAACCTTCAAAGTTTTTAGCAATCAATTGATGGTCGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCACGTCCCTCGGGAATTGCACAAGTTTGCTCACCATTCAGCTTTCCAACAATCGTTTTTCAGGCGGGATTCCTTCCGGCATCTGGACATCCCCGAACATGGTATCGGTGATGTTAGATGGAAATTCATTCTCAGGGACACTTCCAAGTAAATTGGCAAGGAATTTGTCTAGAGTGGAGATCGCTAACAACAACAACAATATGTTGTCTGGAAAAATTCCAGTGGAATTGACCAGTCTTTGGAACATCACTTTAAATCTCTCAAGAAACAAACTTTCTGGCCTAATTCCCAAGGCATTAGGTTCTTTAACCAGCCTTAGTTACCTCGACCTTTTCAACATGAAGCATATGAAGACAGTTTCTTGA 966 43.17 MLVKQGEPDTMSGIAGSYGYIAPEYAYTTKVNKKIDVYSFGVVLLELVTGREPNNGDEHVCLAEWAWDQFREEKTIEEVMDEEIKEECDRAQVATLFKLGIRCTNKLPSNRPTMKGVLKILQQCSPQEGHGRNKKDHEESQGKRNHHILQLAANQICSSPFNTLSGEIPANISLIPTLETFKVFSNQLMVASNNNLSGEVPTSLGNCTSLLTIQLSNNRFSGGIPSGIWTSPNMVSVMLDGNSFSGTLPSKLARNLSRVEIANNNNNMLSGKIPVELTSLWNITLNLSRNKLSGLIPKALGSLTSLSYLDLFNMKHMKTVS* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 299265 314682 + Vvi4g24 Vvi4g24 784803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g24 321 SUPERFAMILY Protein kinase-like (PK-like) 10 122 IPR011009 -
Vvi4g24 321 Pfam Protein kinase domain 9 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g24 321 Gene3D Transferase(Phosphotransferase) domain 1 2 146 - -
Vvi4g24 321 ProSiteProfiles Protein kinase domain profile. 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g24 321 Gene3D Ribonuclease Inhibitor 147 318 IPR032675 -
Vvi4g24 321 SUPERFAMILY L domain-like 161 315 - -
Vvi4g24 321 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 138 - -
Vvi4g24 321 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 159 188 - -
Vvi4g24 321 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 189 310 - -
Vvi4g24 321 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 189 310 - -
Vvi4g24 321 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 159 188 - -
Vvi4g24 321 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 1 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g24 - - K00924 vvi:100244081 285.804
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g24 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76613 PF00069 Pkinase 3.30E-11 CL0016 Vvi PK