Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g244 ATGGTATCAGCAGATACGCCTGAGTCCACTATTCTTGTCAAGTTCAAGGCCTCTTTGTTTAATGCCTCAGCACTTCGCGATTGGAATGAGTCTTCAGATCCATGTTCAGATGGCAATGGTTGGACAGGTGTAAAGTGCTTTGAGGGGAAAGTATGGACGTTGCAGCTAGAAAATATGGGACTGGCAGGCCAAATTGATATTGAATCACTTAAGGAGTTACAAATGTTGCGAACTATAAGCATCATGGGCAACAGCTTTGGTGGTCCAATGCCTGCTTTCAAGAGACTTGCTGCATTGAAATCATTGTATTTGTCCAACAACCGGTTTTCTGGTGAGCTTCCTCATGATGCTTTTGCTCACATGAATTGGTTGAAGAAAGTTCATCTGGCACAGAATGAGTTTACTGGCAAGATCCCCAAGTCTCTTGCTAAGTTGCCAAGGCTTTTGGAGGTGCTGCTTGAGAACAACAATTTTGAAGGAAAGATACCCAAATTTCCACAGAATGAACTGCAAATGGTGAACATGTCAAACAATGCATTGGAGGGTCGTATACCAGCTAGCCTAAGCAAGATGGACAGGAGCTCATTCATTGGTAACCTATGGTCTTCTCTTTGTTCAGCTCTTTCCTATATTTATATCTCATCTACCCAATTGTTTGCTGCCCAGGATGTTGTCATTGGTTTTGACCTTTCGTTTTCACCATGCAAGGAATCTAAGAAGCCGAGTATCCTCATCATTGCCCTAGAGGCTGCTGTCTATGAGGCCGAACACAAGGAAGTTGGATCCACTGGGGTTTACAAGAAGGGTGAACAAGGACAGTTATACTTTGTAAGGAATGATAGGGAGAGGTTTGAGCTGCAAGACCTGCTTAGAGCTTCTGCTGAGGTTCTGGGCAGTGGGAGCTTTGGGTCTTCTTACAAGGCTGTTCTTCTCAGTGGACCAGCCATGGTTGTAAAGAGGTTTAAGCAAATGAACAGATTGGGAAGCGGCGATTTCCATGAGCACATGAGAAGGCTAGGAAGGTTGTCACACCCCAACTTGCTTTCTCTTGTGGCCTTCTATTATAAAAAGGAAGAAAAGCTTCTGGTTTCTGATTTTGTGCCTAATGGCAGCTTGGCTAGTCATCTTCATAGTAAACGCGCTCCTGGCCAGCCAGGGCTCGACTGGCCAATTCGCTTGAAGATCATACAAAAAGTGGCCCACGCCTTAGCTTACCTCTACAAAGAGCTTTCTGACTTGACTCTACCTCATGGTCACCTAAAGTCTTCCAATGTGCTTCTAGACGACAAATTTGAGCCAGTACTATCAGACTATGCACTTGTGCCTGCAATCAACAGAGAGCATGCTCAGCAGATCATGGTGGCGTATAAATCGCCAGAGTTTATGCAGTATGATCGAACAACGAGGAAGACAGATGTATGGAGCCTTGGGATACTAATACTGGAGATGCTGACAGGTAAGTTCCCGGCAAATTATCTGAAACAAGGTAAGGGTGCTAATTCTGATTTGCTCAGCTGGGTGAACTCTGTTGTAAGAGAGGAGTGGACTGGTGAGGTGTTTGATAAAGATATGAAGGGCACAAGGAATGGGGAAGGTGAGATGCTTAAGCTGTTGAAGATTGGAATGAGTTGCTGTGAATGGAATATGGAGAAGAGGTGGGATTTGAAGGAGGCTGTTAAGAGGATTGAAGAGTTGAAGGAGAGGGATTCAGATGAAGACAACTCTTCATATGCTAGTGAAGGAGACATTTACTCTTCTAGAGCTATGACTGATGATGACTTCTCTTTCTCAGTTAACATCACCAATGTCTACATCTTAGCCATAACATACGTTAGCAACAATGACTCATCCCTTATCATCATATTCACCTACACTTCATGTGGGTGGATATTCCTCTCCTCACTAAATTTATTCTCCTTGCGCCCTTTTTCCTTTTCGCAAATCTCTCAAAACAAAGGGTTGATCCATGAAAGAAGGATAATCAACAACTATAAGAGGAAAAGAGTGGGTGGCAGTTCTTGCTTCAAGCTCTAA 2034 43.81 MVSADTPESTILVKFKASLFNASALRDWNESSDPCSDGNGWTGVKCFEGKVWTLQLENMGLAGQIDIESLKELQMLRTISIMGNSFGGPMPAFKRLAALKSLYLSNNRFSGELPHDAFAHMNWLKKVHLAQNEFTGKIPKSLAKLPRLLEVLLENNNFEGKIPKFPQNELQMVNMSNNALEGRIPASLSKMDRSSFIGNLWSSLCSALSYIYISSTQLFAAQDVVIGFDLSFSPCKESKKPSILIIALEAAVYEAEHKEVGSTGVYKKGEQGQLYFVRNDRERFELQDLLRASAEVLGSGSFGSSYKAVLLSGPAMVVKRFKQMNRLGSGDFHEHMRRLGRLSHPNLLSLVAFYYKKEEKLLVSDFVPNGSLASHLHSKRAPGQPGLDWPIRLKIIQKVAHALAYLYKELSDLTLPHGHLKSSNVLLDDKFEPVLSDYALVPAINREHAQQIMVAYKSPEFMQYDRTTRKTDVWSLGILILEMLTGKFPANYLKQGKGANSDLLSWVNSVVREEWTGEVFDKDMKGTRNGEGEMLKLLKIGMSCCEWNMEKRWDLKEAVKRIEELKERDSDEDNSSYASEGDIYSSRAMTDDDFSFSVNITNVYILAITYVSNNDSSLIIIFTYTSCGWIFLSSLNLFSLRPFSFSQISQNKGLIHERRIINNYKRKRVGGSSCFKL* 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2391521 2397246 + Vvi4g244 Vvi4g244 785023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g244 677 Pfam Leucine rich repeat N-terminal domain 8 46 IPR013210 -
Vvi4g244 677 SUPERFAMILY L domain-like 33 649 - -
Vvi4g244 677 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Vvi4g244 677 PANTHER LRR RECEPTOR-LIKE KINASE 7 576 - -
Vvi4g244 677 Coils Coil 548 568 - -
Vvi4g244 677 ProSiteProfiles Protein kinase domain profile. 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g244 677 SUPERFAMILY Protein kinase-like (PK-like) 295 566 IPR011009 -
Vvi4g244 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 576 - -
Vvi4g244 677 Gene3D Ribonuclease Inhibitor 6 228 IPR032675 -
Vvi4g244 677 Gene3D Transferase(Phosphotransferase) domain 1 367 588 - -
Vvi4g244 677 Pfam Protein kinase domain 294 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g244 677 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g244 Vvi11g819 ECH
Vvi4g244 Vvi9g1057 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76614 PF00069 Pkinase 2.60E-30 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g244 - - vvi:104878991 1085.86