Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g245 ATGGCAGGGCCTGATCTTGGAGTGGAAAGTGTAGACAGCAACGACATCATAACAGTATTAGCATCAGAAGGGATTGAGTTCCTTTTATCTGGTGAAGGAAAGGTCTCTTTATCATCAACTGAAGGGAAGATGATTTGCCTCTTCTTCTCAGCCAACTGGTGCAGGCCTTGTAGAACTTTTACACCACAGCTGGTCCAAATCTATAATTCATTAATAAAGACTGGTAGAATGATAGAGATTATATTCATATCCTTTGACCGAGATGAGACTGGATTTGGGGAGCACTTTAAGTCCATGCCATGGCTTGCAGTTCCGTTCAATGTAGATTTGCATAGGCGATTGAGTGACCACTACCATGTTGATCACATCCCATCATTTATACCATTGGGCTTGGATGGAAAATCAATTGAAGAAGATGCAATTGGGTTGATTGAAGACTATGGTGCAAGTGCATTTCCCTTCACAAGCCAGAGAAGGGAGGAATTGAAGGCTATGGATAATGCTAAGCGTCAGGGAGGAAAACTAGAAGAACTTTTGGCAAATGAAGGACGAAACCATGTGATTTCTAGCAGTGGTAGAGAGATATTAGTATCTGAACTTGTTGGGAAGACAATAGGCCTCTACTTTGCTGCGCATTGGTGCCCTCCTTGCCGCGCCTTCACTGCACAACTTATAGAAGCTTACAACAAGCTGGTGGCCACTCGAAATCAGTGCTTTGAAATAATATTTGTCTCAACAGATCGAGACCACCAAGAATTTGATCTCAGCTTAAGTAACATGCCATGGCTAGCCATCCCATACGAGGACAAGGCGCGACAAGACCTTTGCAGGATCTTTGACATCAAAGGGATTCCAGCTTTGGTCCTACTAGGCTCTGATGGGAAGACAATTAGCACAAATGGGAGGGCCATTATTTCCTCCTATGGTGCCATGGCCTTTCCATTTACCGAGTCAAGGACTACTGAGATTGAAGCAGCCTTGAAAGAGGAAGGAGACGCGCTGCCTCGCCAGGTAAAGGACCTGAAACATGAACATATACTTAAGCTGGACATGGCCAAAGCATATGTATGTGACTCCTGCAAGAAGCTAGGGAGGTTCTGGGCATTCTCTTGTGATGTATGTGACTATGATCTTCATCCAACATGTGTAGAAGAAAAACAAGAAACTTATTTGGAAGATCCAGTCATGGGGCTTAGAGAGAGTCCAAGAGAAATGTGGCTGGGTAGAGGAAATACAGAAAAGAAGGAAGGAGGAAATCCTTTGGTAGCAGTGGCAATAGACAAGGACAAAGGGAGCCAATCGGCTCTCAAATGGGCTATTGATAATATCCTCAACAGAGGCCAGACTGTTGTTCTCATCCATGTCAAACTCAAACAAAGTCATAGTCATTCTTATCCAAGTATCTCTTTCTCTCCTTCATTCATAAATTCATCTCTAACCGTGGCCAAACTTGATCACTATACCAAGGAGTTGTTCCTTCCATTTCGGTGTTTTTGCACCAGAAAAGATATACAATGCAAAGATGTGATACTAGAAGATACTGATGTAGTGAAAGCATTGATTGAATATGTTTCTCATTCAGCAATTGAGGTTTTGGTTGTTGGTGCCCCTGCAAAAGGTGGCTTTCTCAGATTCAAGGCAATTGACATCCCTGGAAGTATAACAAAAGGGGCACCAGATTTTTGTACTGTATATGTCATATCCAAAGGGAAGATTTCATCCACACGATCTGCCTCCCGTGCAGCCCCAGCCATATCCCCTCTGCGTAACCAAATTATGAACCAAGGGAGCATCAGACCGGATCCATCAGATTTGCCTATTCCCCATGCTCCTAGTTCAAGAGCAGTTGAAAAGCCACCTGTGGAACCACCACGCAGCTCACATGATGATTTCGAACACATCAAGTCACCATTCACTAGAGGAGCAAGAGGCCCAAATGGCAGATCATATGGGGAAATTTCATTACCGGATTCGGATATATCCTTTGTCAGCTCTGGTAGGCCAAGCACTGACCGCATGTTTCCTCCATTTTATGACAGCAACATTGACATAATCAGGAGCAACCCACGGCTCTCAAACAGTTCTGACATGGATAACCAAACCTTTGAGTCATCACAAATGGGAAGAAAATCAATGGAAATTGGTTCTCCACCTGAATTCTTAGCAATTTCCCAGGAAAATGATAGGACGTCATGGTCATCGCAGTCGGCGGAAGATGTGGAAGCTGAAATGAGGAGGCTAAAGCTGGAGCTCAAGCAGACAATGGATATGTACAGTACAGCCTGCAAAGAAGCACTCTCAGCGAAACAGAAGGCGAGGGAGCTTCAGCGCTGGAAACTAGAAGAAGAACAGAGGTTAGAAGAGGCGCGACTTGCTGAAGAAGCTGCATTGGCAATTGCAGAAAGGGAAAAAGCTAAGTCCTGGATTCCCTGGCACAAACCGATGTCAGGTACAGGAATTGCAATTAAGGTTCTTCGACCAGATGCCGCTCAAGGAAGGTCACAGTTCCAGCAGGAGGTTGAAGTTCTCAGCTGCATACGCCATCCTAACATGGTTCTCCTCCTGGGAGCCTGCCCAGAGTATGGATGCTTGGTCTATGAGTACATGGCTAATGGGAGCTTAGAAGACCGGCTTTTCAGGCGAGGAGACTCTCCACCTCTGTCTTGGCAGCTGAGGTTCCGAATTGCAGCTGAAATTGGCACTGGACTGTTGTTCCTCCACCAGACTAAACCAGAGCCACTAGTGCACCGTGACCTAAAACCAGCCAACATCCTGCTGGACCGCAACTACGTAAGCAAGATTAGTGACGTTGGGTTGGCCAGGCTGGTTCCCCCATCTGTAGCTGACAATGTGACCCAGTATCGGATGACATCAACAGCTGGGACTTTCTGCTATATAGATCCAGAGTATCAGCAAACAGGCATGCTGGGCATAAAATCTGATGTCTACTCCCTTGGCATCATGCTTCTACAGATAATAACAGCCAAGCCACCAATGGGGTTGACTCACCTTGTTGAAAGAGCTATTGAAAAAGATACATTTGAAGAGATGCTGGATCCAGTTGTGCCTGATTGGCCACTTGAAGAGGCATTGAGCTTCGCCAAGATAGCCCTCCAGTGTGCAGAACTAAGGCGGAAAGACAGACCTGATCTTGGCAAGGCTGTGTTACCAGAACTCAACAGATTGAGAGAGCTTTCAGAGGAACATTTGGACCCAACTATGATGGGTGGCAGTCAGTACCACTCTACCAACCACAGCCAAGTTTCCTTCCGTCGGGATGTCGCAAGTGATCCTCTGCATGGACAGCGTGGATACTCTGAAGCTAGCTCCAAGAGCCGATCAACCTCATATTTTTCTGGAAGGTCAGGAAACAGGTTGTGA 3381 45.81 MAGPDLGVESVDSNDIITVLASEGIEFLLSGEGKVSLSSTEGKMICLFFSANWCRPCRTFTPQLVQIYNSLIKTGRMIEIIFISFDRDETGFGEHFKSMPWLAVPFNVDLHRRLSDHYHVDHIPSFIPLGLDGKSIEEDAIGLIEDYGASAFPFTSQRREELKAMDNAKRQGGKLEELLANEGRNHVISSSGREILVSELVGKTIGLYFAAHWCPPCRAFTAQLIEAYNKLVATRNQCFEIIFVSTDRDHQEFDLSLSNMPWLAIPYEDKARQDLCRIFDIKGIPALVLLGSDGKTISTNGRAIISSYGAMAFPFTESRTTEIEAALKEEGDALPRQVKDLKHEHILKLDMAKAYVCDSCKKLGRFWAFSCDVCDYDLHPTCVEEKQETYLEDPVMGLRESPREMWLGRGNTEKKEGGNPLVAVAIDKDKGSQSALKWAIDNILNRGQTVVLIHVKLKQSHSHSYPSISFSPSFINSSLTVAKLDHYTKELFLPFRCFCTRKDIQCKDVILEDTDVVKALIEYVSHSAIEVLVVGAPAKGGFLRFKAIDIPGSITKGAPDFCTVYVISKGKISSTRSASRAAPAISPLRNQIMNQGSIRPDPSDLPIPHAPSSRAVEKPPVEPPRSSHDDFEHIKSPFTRGARGPNGRSYGEISLPDSDISFVSSGRPSTDRMFPPFYDSNIDIIRSNPRLSNSSDMDNQTFESSQMGRKSMEIGSPPEFLAISQENDRTSWSSQSAEDVEAEMRRLKLELKQTMDMYSTACKEALSAKQKARELQRWKLEEEQRLEEARLAEEAALAIAEREKAKSWIPWHKPMSGTGIAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFRRGDSPPLSWQLRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDVYSLGIMLLQIITAKPPMGLTHLVERAIEKDTFEEMLDPVVPDWPLEEALSFAKIALQCAELRRKDRPDLGKAVLPELNRLRELSEEHLDPTMMGGSQYHSTNHSQVSFRRDVASDPLHGQRGYSEASSKSRSTSYFSGRSGNRL* 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2397245 2404845 + Vvi4g245 Vvi4g245 785024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g245 1126 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 414 807 - -
Vvi4g245 1126 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 817 1095 - -
Vvi4g245 1126 MobiDBLite consensus disorder prediction 1103 1126 - -
Vvi4g245 1126 Coils Coil 783 803 - -
Vvi4g245 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 914 926 IPR008271 GO:0004672|GO:0006468
Vvi4g245 1126 CDD TryX_like_TryX_NRX 185 315 IPR045870 GO:0004791
Vvi4g245 1126 Pfam Universal stress protein family 422 545 IPR006016 -
Vvi4g245 1126 SUPERFAMILY Thioredoxin-like 187 298 IPR036249 -
Vvi4g245 1126 CDD STK_N 421 570 - -
Vvi4g245 1126 Pfam Protein tyrosine and serine/threonine kinase 816 1052 IPR001245 GO:0004672|GO:0006468
Vvi4g245 1126 Gene3D Glutaredoxin 178 317 - -
Vvi4g245 1126 Gene3D Transferase(Phosphotransferase) domain 1 870 1077 - -
Vvi4g245 1126 Coils Coil 737 757 - -
Vvi4g245 1126 SUPERFAMILY Cysteine-rich domain 334 384 IPR046349 -
Vvi4g245 1126 SUPERFAMILY Protein kinase-like (PK-like) 816 1055 IPR011009 -
Vvi4g245 1126 MobiDBLite consensus disorder prediction 621 637 - -
Vvi4g245 1126 ProSiteProfiles Protein kinase domain profile. 786 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g245 1126 Gene3D Glutaredoxin 21 158 - -
Vvi4g245 1126 Pfam Thioredoxin-like 42 133 IPR012336 -
Vvi4g245 1126 Pfam Thioredoxin-like 202 295 IPR012336 -
Vvi4g245 1126 MobiDBLite consensus disorder prediction 578 648 - -
Vvi4g245 1126 MobiDBLite consensus disorder prediction 1097 1126 - -
Vvi4g245 1126 ProSiteProfiles Thioredoxin domain profile. 1 170 IPR013766 -
Vvi4g245 1126 Gene3D Phosphorylase Kinase; domain 1 811 869 - -
Vvi4g245 1126 PANTHER OS02G0152300 PROTEIN 817 1095 - -
Vvi4g245 1126 PANTHER OS02G0152300 PROTEIN 414 807 - -
Vvi4g245 1126 SMART serkin_6 786 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g245 1126 SUPERFAMILY Thioredoxin-like 31 136 IPR036249 -
Vvi4g245 1126 Gene3D HUPs 421 566 IPR014729 -
Vvi4g245 1126 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 422 545 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g245 Vvi9g1056 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76615 PF07714 PK_Tyr_Ser-Thr 1.40E-33 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g245 - K17609 vvi:100257684 811.986