Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g247 ATGGAGCCTGTTCCAAGCGGCAACCTGCCTCCTGGCTTTGATTCATCGTCATGCCGCAGTGTTTATGTAGGTAATATTCATGTAAATGTCACTGAGAAACTTCTTGCAGAAGTTTTCCAAAGTGCTGGTCCTCTTGCTGGATGCAAACTCATTAGAAAGGATAAGTCGTCATATGGTTTTGTGGACTACCTTGATCGAGCATCTGCTAGTCTTGCAATAATGACATTGCATGGACGTCAAGTTTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAGTGGCCAGAGGGAAGACACGTCAGGGCACTTTAATATATTTGTTGGTGATTTGAGCCCAGAGGTTACTGACGCAACTTTATATGCCTGCTTCTCAGTTTTTGCTAGTTGTTCAGATGCAAGGGTCATGTGGGATCACAAAACTGGACGGTCAAAAGGATATGGCTTTGTTTCTTTCCGTAATCAGCAGGATGCACAGAGTGCCATCAATGACTTGAGTGGTAAATGGCTTGGGAATAGGCAAATAAGATGCAACTGGGCAACTAAAGGTGCTGGCTTTAATGAGGACAAGCAGGTTAATGAAAATCAAAACGCAGTTGTACTTACTAATGGATCTTCAGATGGAAGTCAAGAGAATACAAATGAGGAGGCCCCTGAAAATAATCCAGCATACACTACTGTCTATGTTGGCAACCTTTCTCATGAGGTAACTCAAGCTGAACTTCACTGTCAGTTTCATGCTCTTGGAGCTGGGGTTATTGAGGAAGTGCGCATCCAGAGGGATAAAGGTTTTGGGTTTGTCAGGTACCACACCCATGAAGAAGCAGCCTTGGCCATTCAGATGGCGAATGGAAGGATAGTTCGTGGAAAATCCATGAAGTGCTCATGGGGTAGCAAGCCAACGCCTCTCGGTACAGCTTCTAATCCCCTACCTCCTCCAGCTCAACCATATCAGATCCTTCCTACTGCTGGCATTAACCAAGGCTACTCACCAGCAGAGTTGTTGGCCTATCAGCGCCAGCTTGCCTTAAGCCAAGCTGCTGCATCCAGCCTCTCGGGCCAAGCTCTTATGCAGATGACTGGACATCATGGTCTAGCTGCAGGTTCCATGGGTGTGAGCTCTGGTGGCACCCAAGCTATGTATGATGGATATCCCAATAATTCATCAGGCCAGCAGCTGATGTATTACCATTAA 1194 46.15 MEPVPSGNLPPGFDSSSCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKDKSSYGFVDYLDRASASLAIMTLHGRQVYGQALKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVMWDHKTGRSKGYGFVSFRNQQDAQSAINDLSGKWLGNRQIRCNWATKGAGFNEDKQVNENQNAVVLTNGSSDGSQENTNEEAPENNPAYTTVYVGNLSHEVTQAELHCQFHALGAGVIEEVRIQRDKGFGFVRYHTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPLGTASNPLPPPAQPYQILPTAGINQGYSPAELLAYQRQLALSQAAASSLSGQALMQMTGHHGLAAGSMGVSSGGTQAMYDGYPNNSSGQQLMYYH* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2407999 2428839 - Vvi4g247 Vvi4g247 785026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g247 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 93 IPR000504 GO:0003723
Vvi4g247 397 SUPERFAMILY RNA-binding domain, RBD 5 97 IPR035979 GO:0003676
Vvi4g247 397 Gene3D - 98 192 IPR012677 -
Vvi4g247 397 MobiDBLite consensus disorder prediction 201 222 - -
Vvi4g247 397 CDD RRM2_PUB1 105 179 - -
Vvi4g247 397 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 1 394 - -
Vvi4g247 397 CDD RRM3_TIA1_like 225 299 - -
Vvi4g247 397 SUPERFAMILY RNA-binding domain, RBD 212 301 IPR035979 GO:0003676
Vvi4g247 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Vvi4g247 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 299 IPR000504 GO:0003723
Vvi4g247 397 SUPERFAMILY RNA-binding domain, RBD 98 186 IPR035979 GO:0003676
Vvi4g247 397 SMART rrm1_1 20 89 IPR000504 GO:0003723
Vvi4g247 397 SMART rrm1_1 105 178 IPR000504 GO:0003723
Vvi4g247 397 SMART rrm1_1 226 295 IPR000504 GO:0003723
Vvi4g247 397 Gene3D - 202 303 IPR012677 -
Vvi4g247 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 394 - -
Vvi4g247 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Vvi4g247 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 292 IPR000504 GO:0003723
Vvi4g247 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Vvi4g247 397 Gene3D - 5 97 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g247 K13201 TIA1, TIAL1; nucleolysin TIA-1/TIAR - vvi:100245579 777.319
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g247 Vvi9g64 ECH
Vvi4g247 Vvi9g255 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0627 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000889 3 4 2 3 2 2 5 3 2 3 3 2 4 3 3 5 2 3 3 2 2 3 3 1 2 2 3 3 5 3 86