Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g248 ATGTTGGAGAATCAGGTTTTGCTCCTTTTATCTCATTGCAATATTTTAACTAACACTGCAGTATTTCAGAATAATTCAACTGGGAACAAGCCTGTGGAGGCGCTTGATAGTTCTGTTTCAACGAAGAGCCAATCCAAGAAGGCAACTGGCAGCTCTAATAAAAAGGGAAAATCTCCAAAAGTGGCTAATGAGTCACCAAAGAAACAGACGGTCCACACTATGGGCAAAATTAAGTCCCTGGAACAAAGGCCACTGAAGAAATTATATCCTTCTTCTGGGAAATCTGTTGTGGTGGTGGAGTCTGTTACAAAGGCTAAGGTCATTCAGGGCTACCTTGGTGACATGTACGAAGTCCTACCTAGCTATGGGCATGTTAGGGACTTGGCTGGAAGGTCAGGATCTGTGCGGCCTGATGATGACTTCAGCATGGTTTGGGAGGTCCCATCTGCTGCCTGGACTCATCTTAAGAGTATTAAGGTTGCCCTAGGCGGAGCAGAAAATCTTATTCTTGCATCAGATCCTGATCGTGAAGGAGAGGCTATTGCTTGGCACATTATTGAGATGTTGCTGCAGCAGGATGCTTTACATAAAGATTTAACTGTAGCAAGGGTTGTTTTTCATGAAATAACTGAGTCATCCATCAAAAGTGCTCTGGATGCTCCAAGAGAGATTGATGTAAACTTGGTTCATGCTTACCTCGCACGACGTGCTCTTGATTATTTGATCGGATTCAACATTTCCCCACTATTATGGAGGAAGTTACCAGGTTGCCAGTCAGCTGGGCGAGTCCAATCAGCTGCTCTGGCTCTTATATGTGATAGAGAAATGGAAATTGATGAATTTAAACCACAGGAATATTGGACGGTTGAATTAAATCAATTTTCAATCAGCTCTCATACAGAGGCAAAGGCTATTGAACAGGAGATTAATTCATTGGAGTTCAAAGTGATTGGTTCTAAAAGAAATAAAATGCGGAAAAATCCTCCCACACCATATATAACATCCACACTTCAGCAAGATGCTGCAAACAAATTACATTTTTCAGCAATGTATACAATGAAGTTAGCACAGAGACTTTATGAGGGGGTTCAATTATCAGATGGGAAGGCAGCAGGATTAATAACATACATGAGAACAGATGGACTACATGTTTCTGATGAAGCTGCGAAGGACATACGCTCCTTGGTTGCAGAAAGGTATGGGTCCAATCTTGCATCAGATGGTGTTCGCAAATACTTCAAGAAAGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCAACTGATATTCAGCGGTTACCATCAATGCTTGCTGGAGTACTTGATGAAGATTCCTTAAAGTTGTACACTCTTATCTGGTCTCGCACAATGGCATGCCAAATGGAACCAGCTACAATTGATCAGATCCAAGTCGATATAGGGAATGCCAATGAGTCTGTTGTGTTTCGATCCACATGCTCAGGAGTTGAGTTTTTTGGATACCAGGCAGTCTATAAGAAAGAGAAAGATCAAAAGGCCCAAAATCGGACACAGGACTCTTTCGAATTTGGACTGACAGCTCCAATCCTTCAAAAATATGCATGTCAAACCCATACCAAGGATGCCAAAAAGGAAAAAAGTAGAAGGCAACAGAATCATGTCAGAGGAAAAATAATATCTTCAAACTTTGTTATTCTTTGTATGTGTACCTCCTCATTCATTGCATGGTGGCTCAATTTTCCCGTTTTGTTTTGTGGGGGGTGGCTCCATTATGCTTCTGTAGTGTTGGAAGAAATTCAACTGCATGATTTTTGTAAAGAGATAGAGCTGTTGGTGTTGAAACTTAAAGTTAGTGTTAAGAACTTGAGACTGGGTCTTTTTTTCCACTGTTCTCTTTTAGGGATGGGGAAGATACTTTTGGATGCTGTGCTGTTGTCATTTAAGCTACATTCAGATGTGGAAGCTAAAGCAATCAGAGTTGATGAAAATGAAGGGAATGAACGTGGTGAAGTCTTTAAGGCTCTCAGTTCATTGAAGGCAGGGGATCCATTGTATCTTAGTTTACTGGAGCTAGAGCAGCATCATACCCTTCCTCCATCACGGTACTCAGAGGGTGCCCTGGTTAAGAAGCTGGAGGAGCTTGGGATTGGAAGGCCTTCTACATATGCAATCACAATGAAAGTTTTACAGGATAGAAACTATGTGACAGTCAAAAACCGAGTATTATATCCGGAATTTCGTGGTCGCATGGTGTCGGCATTTCTCTCTCACCATTTTTCAGAGGTCACAGACTATAGTTTCACTGCTGATATGGAAACTGAGCTTGACAATGTTTCTGCTGGCTTGACTGAGTGGAAAGGTCTCCTCAAAGATTATTGGACACGATTCAGCATGTATTGTAATCGTGTTAGTAATGTCCACATTCATCAGGTGGAGAAGATGTTGGAGAAAAAATTTGGGGATTTTTTGTTTTCCTTTCTTCCCGATAAAAGTAGGACATGCCCAAGTTGTATGGAGGGCACATTGATTTTCAAAGTAAGTCGATTTGGTTCAGGCTATTTTATAGGTTGTGATCAACACCCAAAGTGCAAGTACATTGCTAAGATGTTAGATGGTGATGATGATGAAGAGGTTGCTTCTCAAGACAAAACATTTGAGGAGCCAAAGGCTCTGGGTCTTAGTCCTGGTTCAAGTGAGAAGATTCTTTTGAAGAATGGTCCATATGGATTCTATCTTCAGCTTGGTGAAGACAGGAAAGGATACTTGCCTAAAAGAGCCTCTGTTTCCCATATAAAGGATGTGGGCTCTATAACACTTGAAGATGCTCTTGAGTTGCTACGCTATCCTGTGACATTGGGAAACCATCCAAATGATGATCACCCTGTAGTCCTAAAGCTGGCAAAAAATGGATTTTCCATTAGACATCGGCGAACAATTGCTCCTGTGCCTAAGAACATAAAACCAAATGACATCACTCTAGAGAAAGCATTGAAGCTACTGTTGGGTAAAGATGTAAAGCAGTCTGGCCGGCCCAAGAACAAAAAGAAACAAGAACTTCATATCATTCAGCCTGTTGAATCCTCGGTTTCCGGAAGGATAACCCCTGGATCAAACCAAGTCTCATGA 3108 41.6 MLENQVLLLLSHCNILTNTAVFQNNSTGNKPVEALDSSVSTKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKKLYPSSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHEITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDREMEIDEFKPQEYWTVELNQFSISSHTEAKAIEQEINSLEFKVIGSKRNKMRKNPPTPYITSTLQQDAANKLHFSAMYTMKLAQRLYEGVQLSDGKAAGLITYMRTDGLHVSDEAAKDIRSLVAERYGSNLASDGVRKYFKKVKNAQEAHEAIRPTDIQRLPSMLAGVLDEDSLKLYTLIWSRTMACQMEPATIDQIQVDIGNANESVVFRSTCSGVEFFGYQAVYKKEKDQKAQNRTQDSFEFGLTAPILQKYACQTHTKDAKKEKSRRQQNHVRGKIISSNFVILCMCTSSFIAWWLNFPVLFCGGWLHYASVVLEEIQLHDFCKEIELLVLKLKVSVKNLRLGLFFHCSLLGMGKILLDAVLLSFKLHSDVEAKAIRVDENEGNERGEVFKALSSLKAGDPLYLSLLELEQHHTLPPSRYSEGALVKKLEELGIGRPSTYAITMKVLQDRNYVTVKNRVLYPEFRGRMVSAFLSHHFSEVTDYSFTADMETELDNVSAGLTEWKGLLKDYWTRFSMYCNRVSNVHIHQVEKMLEKKFGDFLFSFLPDKSRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPKCKYIAKMLDGDDDEEVASQDKTFEEPKALGLSPGSSEKILLKNGPYGFYLQLGEDRKGYLPKRASVSHIKDVGSITLEDALELLRYPVTLGNHPNDDHPVVLKLAKNGFSIRHRRTIAPVPKNIKPNDITLEKALKLLLGKDVKQSGRPKNKKKQELHIIQPVESSVSGRITPGSNQVS* 1036
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2431146 2462039 - Vvi4g248 Vvi4g248 785027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g248 1035 Pfam Toprim domain 96 209 IPR006171 -
Vvi4g248 1035 PRINTS Prokaryotic DNA topoisomerase I signature 168 181 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 PRINTS Prokaryotic DNA topoisomerase I signature 258 276 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 PRINTS Prokaryotic DNA topoisomerase I signature 371 380 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 PRINTS Prokaryotic DNA topoisomerase I signature 449 465 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 PRINTS Prokaryotic DNA topoisomerase I signature 709 723 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 MobiDBLite consensus disorder prediction 26 76 - -
Vvi4g248 1035 MobiDBLite consensus disorder prediction 999 1035 - -
Vvi4g248 1035 MobiDBLite consensus disorder prediction 1017 1035 - -
Vvi4g248 1035 Gene3D Topoisomerase I, domain 3 293 514 IPR013825 -
Vvi4g248 1035 Gene3D Topoisomerase I, domain 3 654 693 IPR013825 -
Vvi4g248 1035 Gene3D Topoisomerase I, domain 3 280 291 IPR013825 -
Vvi4g248 1035 SMART topIaneu2 320 746 IPR003602 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 SUPERFAMILY Prokaryotic type I DNA topoisomerase 661 835 IPR023405 -
Vvi4g248 1035 SMART toprim5 94 194 IPR006171 -
Vvi4g248 1035 ProSiteProfiles Toprim domain profile. 94 209 IPR006171 -
Vvi4g248 1035 Pfam Topoisomerase DNA binding C4 zinc finger 826 862 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Vvi4g248 1035 Hamap DNA topoisomerase 1 [topA]. 94 970 IPR028612 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 Gene3D Bacterial Topoisomerase I, domain 1 821 867 - -
Vvi4g248 1035 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 357 380 IPR023406 GO:0003917
Vvi4g248 1035 PANTHER BNAA01G05990D PROTEIN 48 290 - -
Vvi4g248 1035 PANTHER BNAA01G05990D PROTEIN 290 513 - -
Vvi4g248 1035 PANTHER BNAA01G05990D PROTEIN 643 1009 - -
Vvi4g248 1035 MobiDBLite consensus disorder prediction 999 1015 - -
Vvi4g248 1035 Gene3D - 91 230 - -
Vvi4g248 1035 Gene3D Topoisomerase I, domain 2 694 787 IPR013824 -
Vvi4g248 1035 Gene3D Topoisomerase I, domain 2 234 279 IPR013824 -
Vvi4g248 1035 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 48 290 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vvi4g248 1035 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 290 513 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vvi4g248 1035 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 643 1009 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vvi4g248 1035 CDD TOPRIM_TopoIA_TopoI 94 221 IPR034149 -
Vvi4g248 1035 Pfam DNA topoisomerase 662 783 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 Pfam DNA topoisomerase 224 520 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 Gene3D Topoisomerase I, domain 4 328 464 IPR013826 -
Vvi4g248 1035 Pfam Topoisomerase C-terminal repeat 889 946 IPR025589 -
Vvi4g248 1035 SUPERFAMILY Prokaryotic type I DNA topoisomerase 94 533 IPR023405 -
Vvi4g248 1035 SMART topIban2 200 288 IPR003601 GO:0003677|GO:0003916|GO:0006265
Vvi4g248 1035 CDD TOP1Ac 227 791 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g248 - - - vvi:100247441 912.138
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g248 . . . . . Bpe02g00226 . . . . Cma01g01584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01631 . Cma09g00537 . . . . . . . . . . . . . . . . . . . . . . Cme04g00321
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006908 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 37