Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g25 ATGACAAGTTCAGTTCATAACTTCGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATTGGAGCTGCAAAAGGCCTATGCCACATGCATGAAAACTGCTCTGCCCCGATCATACACCGAGATGTGAAGTCCAACAACATCTTGCTAGATGCTGAGTTCAACGCGAAAATTGCGGATTTTGGATTAGCCAAGATGTTGGTCAAGCAAGGAGAGCCCGACACCATGTCAGGAATTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACGAGAAGATCGATGTATATAGCTTTGGAGTAGTCCTGCTTGAGCTAGTGACGGGGAGAGAACCCAACAGCGGGGACGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAGTTCAAAGAAGGGAAAACCATTGAGGAAGTGATGGATGAGGAGATCAAGGAACAATGTGAAAGAGCACAAGTGACCACTCTCTTCAGTCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAAGAGGTTTTGGAAATTCTTCGACAATGCAATGAAGCAAAAATAACTTGTAATGAAAGTCAAGGTAAACGAAACCATCATATTCTTCAACTTGCAGCCAACCAAATATTTAAAAATTTATATATAATTTTTATATATATTTTAATTAGTTGTCAATTTTGGATATTATCAAATAAAATTTTTTATGTGAAAAAAAAATGTAATATAAATTCCATATATTATTATTTAATATCAATTTTCACCAACCAGATTTTGAAAATGAACCGTCCCAACGCCACAAAAATGCCGAAAGTAAACTTTTTATTTGCCAAAATTCCATTCCCCGCTCTGTTTCTCCTCCTCGTCCTCTCCTTACCCTTTCAAGTAATTTTCGAAAATCTGGACGATGAACTATCAATCCTACTAGACGTTAAACAACAACTGGGCAATCCCTTAATTTGTGACCTCAAGAACCTTATCGTACTTGACGTCTCCAACAATTACATTCCAGGCAAGTTCTCGGATATTCTAAATTGTTCTAAGCTGGAGCATCTCCTCTTGAAGCAAAACTTCTTCCCTTCAGCCCTTCCAAAAGAGTTTGGCGCATTGAAGAAGCTGAAATATTTGTGGATGACGGAGGCGAATTTGATTGGCGAAATACCGGAGAGCTTCAACAATCTATCGAATCTGGAACTCTTGGACCTCTCAGTCAACAAATTGGAAGGTACGATCCCGGGAGGCATGCTTACGTTGAAGAATTTGAACTATTTGCATTTATTCATTAATAGATTGTCCGGCCACATTCCTTCATCCATAGAAGCTCTCAACTTGAAACAAATTGATCTTTCCGACAACCATTTGATGAATAAACTAAGCGGGGAATTACCTCAACATTTATACGCTAGGGGGGCTTTGCTTGGAGTGGTCGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCACGTCCCTCGGGAATTGCACAAGTTTACTCACCATTCAAGTGGAGATCGCTAACAACAAGTTTTATGGTCCAATTCCTGCTGAAATCTCTTCCTGGATGAACATCTCTGTGCTCAATGCCAACAACAATATGTTGTCTGGAAAAATTCCAGTGGAATTGACTAGTCTTTGGAACATCACTGTTCTGTTGCTTGATGAGAATCAATTCTCGGGTGAACTTCCATCCCAGATCATCTCATGGAAGTCGCTCAATAAGTTAAATCTCTCAAGAAACAAACTTTCTGGCCTAATTCCCAAGGCATTAGGTTCTTTAACTAGCCTTAGTTACCTCGACCTGTCAGAAAACCAGTTCTCAGGTCAAATTCCTCCTAAACTTGGCCATTTGAACCTTATTATCCTCCATCTTTCGTCCAACCAACTCTCTGGGATGGTCCCCATTGAATGTGATGCCAAACCCGTCAACTCCGACAAATTGTCAACCAAATATCTCGTTATGATCCTAATTTTCGCTCTAGCTGATCTCGATGAATACAACATATTGTCCAGTTTGACAGAAAATAATCTGATCGTATGTGGTGGGTCAGGGAAAGTATACCGAGTTGCTAATAACCGTTCTGGTGAACTCTTAGCGGTTAAAATGATTTGTAATAACAGGAGATTGGATCAAAAGCTTCAGAAACAATTCGAAACAGAAGTCGAGATATTGAGCACCATGCGCCATGCCAATATAGTGAAGTTGTTGTGCTGCATATCAAATGAAACCTCTAGTCTTCTTGTTTACGAGTACATGGAGAAGCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACATCAATTGCAGGCTCTTACGGGTATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACAAGAAGATCGATGTATATAGCTTTGGAGTAGTCTTGCTTGAGCTTGTGACAGGTAGAGAACCCAACAATGGGGACGAGCACATGTGCCTTGCGGAATGA 2469 41.11 MTSSVHNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDVKSNNILLDAEFNAKIADFGLAKMLVKQGEPDTMSGIAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNSGDEHMCLVEWAWDQFKEGKTIEEVMDEEIKEQCERAQVTTLFSLGLMCTTTLPSTRPTMKEVLEILRQCNEAKITCNESQGKRNHHILQLAANQIFKNLYIIFIYILISCQFWILSNKIFYVKKKCNINSIYYYLISIFTNQILKMNRPNATKMPKVNFLFAKIPFPALFLLLVLSLPFQVIFENLDDELSILLDVKQQLGNPLICDLKNLIVLDVSNNYIPGKFSDILNCSKLEHLLLKQNFFPSALPKEFGALKKLKYLWMTEANLIGEIPESFNNLSNLELLDLSVNKLEGTIPGGMLTLKNLNYLHLFINRLSGHIPSSIEALNLKQIDLSDNHLMNKLSGELPQHLYARGALLGVVASNNNLSGEVPTSLGNCTSLLTIQVEIANNKFYGPIPAEISSWMNISVLNANNNMLSGKIPVELTSLWNITVLLLDENQFSGELPSQIISWKSLNKLNLSRNKLSGLIPKALGSLTSLSYLDLSENQFSGQIPPKLGHLNLIILHLSSNQLSGMVPIECDAKPVNSDKLSTKYLVMILIFALADLDEYNILSSLTENNLIVCGGSGKVYRVANNRSGELLAVKMICNNRRLDQKLQKQFETEVEILSTMRHANIVKLLCCISNETSSLLVYEYMEKQSLDRWLHGKKQRTSIAGSYGYIAPEYAYTTKVNKKIDVYSFGVVLLELVTGREPNNGDEHMCLAE* 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 314871 324465 + Vvi4g25 Vvi4g25 784804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g25 822 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
Vvi4g25 822 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 323 363 - -
Vvi4g25 822 Gene3D Ribonuclease Inhibitor 546 656 IPR032675 -
Vvi4g25 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Vvi4g25 822 Gene3D Ribonuclease Inhibitor 316 474 IPR032675 -
Vvi4g25 822 SUPERFAMILY Protein kinase-like (PK-like) 657 818 IPR011009 -
Vvi4g25 822 Gene3D Ribonuclease Inhibitor 475 545 IPR032675 -
Vvi4g25 822 SMART LRR_typ_2 398 422 IPR003591 -
Vvi4g25 822 SMART LRR_typ_2 571 594 IPR003591 -
Vvi4g25 822 SMART LRR_typ_2 595 619 IPR003591 -
Vvi4g25 822 ProSiteProfiles Protein kinase domain profile. 674 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g25 822 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 504 638 - -
Vvi4g25 822 SUPERFAMILY Protein kinase-like (PK-like) 9 185 IPR011009 -
Vvi4g25 822 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 771 822 - -
Vvi4g25 822 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 459 505 - -
Vvi4g25 822 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 361 458 - -
Vvi4g25 822 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 663 768 - -
Vvi4g25 822 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 193 - -
Vvi4g25 822 Gene3D Transferase(Phosphotransferase) domain 1 665 769 - -
Vvi4g25 822 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 504 638 - -
Vvi4g25 822 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 323 363 - -
Vvi4g25 822 SUPERFAMILY L domain-like 302 639 - -
Vvi4g25 822 Gene3D Transferase(Phosphotransferase) domain 1 770 822 - -
Vvi4g25 822 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 361 458 - -
Vvi4g25 822 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 663 768 - -
Vvi4g25 822 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 1 193 - -
Vvi4g25 822 Pfam Protein kinase domain 682 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g25 822 Pfam Protein kinase domain 19 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g25 822 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 771 822 - -
Vvi4g25 822 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 459 505 - -
Vvi4g25 822 Gene3D Transferase(Phosphotransferase) domain 1 3 213 - -
Vvi4g25 822 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g25 822 SMART serkin_6 674 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76616 PF00069 Pkinase 7.70E-28 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g25 - K00924 bvg:104885827 391.734