Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g250 ATGGTGCAGATGCTGAGGAGTCGATCGACTACAGATTCCGAAGGGGAACTGAGTGTTGGTGAGGTTCGCGCAAATGGGCTTTGTATGAAAACTACTGAAGTCGAGGCCAAACTCGACGAGGGAAATATTGAAGAGGCTGAATCTTCACTAAGGGAGGGGCTATCACTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGGAGGTTGGAGTATCAAAGAGGCAATGTGGAAGGCGCTCTTCGTGTTTTTGATGGTATTGATCTTCAAGCTGCTATACAGCGGTTGCAACCTTCTTTTTCTGAAAGGTTACATCCTAGGAAGGGACGCTCTCGCATTGAATCACTTATCACAGTCTCACAGCATGCCGCTGGCCTAGTGCTGGAAGCAATATACTTGAAGGCCAAGTCTCTTCAAAAGCTTGGACGGTTAACTGAGGCTGCTCATGAATGTAAAAGTGTGCTTGATGCTGTGGAGAGGATATTCCATCATGGCATACCCAATGTGCAAGTGGACAGTAAGTTGCAAGAGACAGTAAGCCAAGCTGTAGAGCTGTTTCCAGAACTTTGGAAGCAGGCTGGTTGCTATCATGAAGCGATGTCTGCTTATAGACGTGCACTGCTAAGTCAATGGAATCTTGATAATGACTGCTGTGCAAGGATTCAAAAAGGGTTTGCAGTGTTCTTGCTCTATAGTGGAGTAGAGGCTGCACCACCCAGTTTAGCTGTTCAGATGGATGGTTCATATGTACCAAGAAATAATCTGGAGGAGGCAATCCTACTTTTGATGATTCTTATGAAAAAAATTTACCTTGGTAAGACCAAATGGGATCCATCAGTTATGGAGCACCTTACATTTGCACTCTCTCTGTGCAGCCAAACCTCTGTTTTAGCAAAGCAACTTGAGGAGGTCATGCCTGGGGTATTTCATCGTGTTGACCGCTGGATAACATTGGCTCTTTGTTACAGTGGAGCTGGACAAAATAGTACTTCCCTGAATCTGTTAAGGAAGTCCCTACACAAACATGAAAGACCAGATGACCTCATGGCATTGTTATTGGCTGCCAAGATTTGCAGTGAGGATTCCCTTCTTGCAGCTGAAGGAGTGGGTTATGCTCAGAGAGCAATCAGTAATACTCAGGGAACAGATCACCATTTTAAGGGTGTAGGTCTTCGCATGTTGGGTCTTTGTCTAGCAAAACAGTCAAAAGCTTCTTTATCAGATGCTGAGAGGGCCCGTCTTCAGTCTGAAGCATTGAAGAAATTGAATGAGGCAGTTCCTTTTGAGCGTGACAATTTAGATTTGATTTTTGAGTTGGGAGTTCAATATGCAGAGCACCGGAATTTGAATGTTGCCTTGCGTTATGCGAAGCGGTTCATTGATGCAACAGGTGGGTCCATATCGAAAGGTTGGAGATTACTTGTTATGATTTTGTCTGCTCAACAAAGATTTTCAGAGGCTGAAGCAGTAACTGATGCTGCTTTGAATGTGACTGCAAAATGGGAGCAAGGACCACTACTTAGACTGAAAGCAAAATTGAAGATCTCTGAGTCATTACCCATGGATGCTATTGAAACTTTTTGTTCCCTCCTTGCATTGGCTCAAGCCCAAAGGAAATCGCTTGGTCCTCGCCCAAGTGTTCATCAGGTTGATGACGATAGAGTCAATGAATTTGAAGTCTGGTATGGCGTCGCGACTTTATACTCAAGCCTTTCACATTGGAGGGATGCAGAGATATGCTTGGGAAAAGCTAGAGAGTTGAAAGAATACTCAGTGGAATTACTGCATGCAGAAGGTGTTAAGTTTGAAGGTCATGGACAAATCCAAGAAGCTTTGGCTGCTTATATCAATGCCCTTTTACTAGATCCAGGTTATGTGCCTTGCAAGATCTTGATTGGTGCTCTATTGTTGAAGATGGGCTCGAAGGCATTTCCTGTTGTGAGAAGCCTACTTTCAGATGCATTGAGGATAGAACCTACCAACCGAATGGCTTGGTATTACCTGGGAATGGCTCACAGAGACGATGGACGAATAGCTGATGCTACAGACTGCTTCCAAGCAGCCTCCATTCTTGAAGAATCCGATCCCATTGAAAGCTTCAGCTCCATTCTTTGA 2109 44.43 MVQMLRSRSTTDSEGELSVGEVRANGLCMKTTEVEAKLDEGNIEEAESSLREGLSLNFEEARALLGRLEYQRGNVEGALRVFDGIDLQAAIQRLQPSFSERLHPRKGRSRIESLITVSQHAAGLVLEAIYLKAKSLQKLGRLTEAAHECKSVLDAVERIFHHGIPNVQVDSKLQETVSQAVELFPELWKQAGCYHEAMSAYRRALLSQWNLDNDCCARIQKGFAVFLLYSGVEAAPPSLAVQMDGSYVPRNNLEEAILLLMILMKKIYLGKTKWDPSVMEHLTFALSLCSQTSVLAKQLEEVMPGVFHRVDRWITLALCYSGAGQNSTSLNLLRKSLHKHERPDDLMALLLAAKICSEDSLLAAEGVGYAQRAISNTQGTDHHFKGVGLRMLGLCLAKQSKASLSDAERARLQSEALKKLNEAVPFERDNLDLIFELGVQYAEHRNLNVALRYAKRFIDATGGSISKGWRLLVMILSAQQRFSEAEAVTDAALNVTAKWEQGPLLRLKAKLKISESLPMDAIETFCSLLALAQAQRKSLGPRPSVHQVDDDRVNEFEVWYGVATLYSSLSHWRDAEICLGKARELKEYSVELLHAEGVKFEGHGQIQEALAAYINALLLDPGYVPCKILIGALLLKMGSKAFPVVRSLLSDALRIEPTNRMAWYYLGMAHRDDGRIADATDCFQAASILEESDPIESFSSIL* 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2476207 2484277 - Vvi4g250 Vvi4g250 785029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g250 702 SUPERFAMILY TPR-like 482 690 IPR011990 GO:0005515
Vvi4g250 702 PANTHER PROTEIN NPG1 14 701 IPR043376 -
Vvi4g250 702 PANTHER CALMODULIN-BINDING PROTEIN 14 701 - -
Vvi4g250 702 Gene3D Tetratricopeptide repeat domain 30 209 IPR011990 GO:0005515
Vvi4g250 702 SUPERFAMILY TPR-like 126 451 IPR011990 GO:0005515
Vvi4g250 702 SMART tpr_5 310 343 IPR019734 GO:0005515
Vvi4g250 702 SMART tpr_5 590 623 IPR019734 GO:0005515
Vvi4g250 702 SMART tpr_5 660 693 IPR019734 GO:0005515
Vvi4g250 702 SMART tpr_5 556 589 IPR019734 GO:0005515
Vvi4g250 702 SMART tpr_5 126 159 IPR019734 GO:0005515
Vvi4g250 702 Gene3D Tetratricopeptide repeat domain 238 539 IPR011990 GO:0005515
Vvi4g250 702 Gene3D Tetratricopeptide repeat domain 552 696 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g250 K21843 - vvi:100267895 1353.58