Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g255 ATGGTGAAATACGCCACGGGATTGAGCCGCGAGTCCCATGTTGACATTGAAGGGATCATTTCTGTCCCCGGCGTTCCCATCAAGGGCGCTACACAACAGGTGGAAGTTCAAGTGAGGAAACTATATGGCATTAGCAAGGCTGAAAATCTACCAATTAATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAGGCTGGAGAGCAGCTTGTTCGTGTTAATCAGGATACCCGATTAAATTATAGGGTTCTTGACTTGAGAACCCCTGCTAATCAAGCAATTTTCCGCGTCCAGTGTCAAGTTGAAAACATATTTAGGCAGTTCTTGTTATCTGAAGGTTTTGTTGGAATCCATACACCCAAATTGATAGGAGGCTCTAGTGAAGGTGGTTCAGCTGTTTTCAGACTGGACTACAAAGGGCAACCTGCATGTCTGGCACAGTCACCTCAGCTTCACAAGCAAATGGCAATCTGTGGTGATTTTGGGCGTGTTTTCGAGATTGGTCCTGTTTTTAGAGCAGAGGACTCTTTCACTCATAGACATCTGTGTGAGTTTACAGGTCTTGATGTTGAAATGGAGATCAAGGAACACTATTTTGAGGTGATGGATATTGTGGACCGGTTATTCGTTGCAATGTTTGACAGTTTGAATGAGAATTGCAAGAAGGAGCTTGAAGCTATTGAGAGGCAGTATCCATTTGAACCTCTAAAGTACTTGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAGGAAGTTGGCATGGAAGTTGATCCTTATGGGGACCTGAACACAGAAGCAGAGAGAAAACTTGGCCAGCTAGTTCTGGAGAAATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCCATTTTATACCATGCCTTCCTACGATGATCCATTGTACAGTAATTCATTTGATGTCTTTATTCGAGGTGAGGAGATCATCTCAGGGGCTCAGCGTGTTCATGTACCTGATTTCTTGGAAAAACGTGCAGAGGCTTGTGGCATTGATGTTAAGACTATATCAACATATATTGATTCCTTCCGGTATGGTGCACCTCCACATGGTGGGTTTGGAGTGGGTTTGGAGCGAGTGGTGATGCTCTTCTGTGCTCTTAATAATATTCGCAAAACTTCACTTTTCCCCCGCGATCCAACCAGAATTGCCCCATGA 1215 44.03 MVKYATGLSRESHVDIEGIISVPGVPIKGATQQVEVQVRKLYGISKAENLPINIEDAARSESEIEKALQAGEQLVRVNQDTRLNYRVLDLRTPANQAIFRVQCQVENIFRQFLLSEGFVGIHTPKLIGGSSEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKEHYFEVMDIVDRLFVAMFDSLNENCKKELEAIERQYPFEPLKYLRKTLRLPFQEGVQMLKEVGMEVDPYGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPSYDDPLYSNSFDVFIRGEEIISGAQRVHVPDFLEKRAEACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCALNNIRKTSLFPRDPTRIAP* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2494952 2500388 - Vvi4g255 Vvi4g255 785034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g255 404 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 1 404 - -
Vvi4g255 404 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 6 404 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Vvi4g255 404 SUPERFAMILY Class II aaRS and biotin synthetases 74 403 IPR045864 -
Vvi4g255 404 TIGRFAM aspS_nondisc: aspartate--tRNA(Asn) ligase 1 404 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Vvi4g255 404 Pfam tRNA synthetases class II (D, K and N) 79 398 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g255 404 Gene3D - 1 50 IPR012340 -
Vvi4g255 404 CDD AsxRS_core 76 399 - -
Vvi4g255 404 Gene3D Bira Bifunctional Protein; Domain 2 51 404 IPR045864 -
Vvi4g255 404 PANTHER ASPARTYL-TRNA SYNTHETASE 1 404 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Vvi4g255 404 PRINTS Aspartyl-tRNA synthetase signature 149 161 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g255 404 PRINTS Aspartyl-tRNA synthetase signature 166 179 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g255 404 PRINTS Aspartyl-tRNA synthetase signature 319 335 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g255 404 PRINTS Aspartyl-tRNA synthetase signature 359 373 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g255 404 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 99 396 IPR006195 -
Vvi4g255 404 SUPERFAMILY Nucleic acid-binding proteins 1 51 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g255 K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] - vvi:100262746 813.142
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36