Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g258 ATGGAATACCCAACATGGAATATGAATAGAGGGGAGAGGGGGAGAAAAGAATTCCCAACATGGAATATGAACAGAGGGAGAAAAGAAGGGATTGAGATGTCATACTCGCTCATCCCTAAAACCCTATCACTCTCTTCTTCCTCTCCTTCCTCTCTCCTCCCTTTTCCTGATAAAACTTCTCCCCCATTTCTCAAATCTTCTCTCAATTCCACACCCAATAGACCCACCATTGTTCCTTCTATAAAGGCTTCTCTTTCAACCTCTCAGCCACCCATTTTAGAATCCTCCAAATCCGACTTAGCTGGTCAGCTCCGGGTCGAGATCCTCTCTGAATCCCTACCCTTCATCCAAAAGTTCAGGGGCAAGACCATCGTCGTCAAGTATGGCGGCGCCGCCATGAAATCCCCTGACCTTCAGGCCTCCGTCATTAACGATCTCGTCCTCCTCTCCTGCGTCGGCCTCCGCCCCGTCTTCGTGCACGGCGGCGGCCCTGAGATCAACCTCTGGCTTGGCCGCTTTGGCCTCGAGCCCAACTTCCTCAATGGCCTCCGCGTCACTGACCACTCCACCATGGAAATCGTCACCATGGTTCTCGTTGGCAAGGTCAACAAGCACCTTGTCTCCTTGATCAACAAGGCCGGTGCCACCGCCGTCGGCCTCTCCGGCATGGACGGCCGTCTCCTCACTGCACGACCCAATCCCAACTCCGCCCAGCTCGGCTTCGTCGGCGACGTCGCCCGCGTCGACCCCACTATCCTCCGCCCCCTCATTGACAACAACCACATTCCTGTAATCGCTTCCGTGGCCTCCGACGAGACTGGCCAATCCTATAACATCAACGCCGACACCGTTGCCGGAGAATTGGCAGCCTCATTGGGTGCGGAGAAGCTGATTTTGTTAACAGACGTGGCCGGAATTCTCGAAAACCGGGACGATCCCTCGAGCTTAGTGAAGCAAATTGACATAAAAGGGGTTAAGAAAATGGAGGGGGAGGGGAAGATTGGTGGCGGAATGATTCCCAAAGTGAATTGTTGTGTTCGATCTCTAGCACAAGGGGTTAGGACTGCTAGTATCATCGACGGCCGCCTTCCTCATTCACTCCTGCTAGAGATCCTCACTGATGAAGGTGCCGGCACAATGATCACTGGGTAA 1152 53.65 MEYPTWNMNRGERGRKEFPTWNMNRGRKEGIEMSYSLIPKTLSLSSSSPSSLLPFPDKTSPPFLKSSLNSTPNRPTIVPSIKASLSTSQPPILESSKSDLAGQLRVEILSESLPFIQKFRGKTIVVKYGGAAMKSPDLQASVINDLVLLSCVGLRPVFVHGGGPEINLWLGRFGLEPNFLNGLRVTDHSTMEIVTMVLVGKVNKHLVSLINKAGATAVGLSGMDGRLLTARPNPNSAQLGFVGDVARVDPTILRPLIDNNHIPVIASVASDETGQSYNINADTVAGELAASLGAEKLILLTDVAGILENRDDPSSLVKQIDIKGVKKMEGEGKIGGGMIPKVNCCVRSLAQGVRTASIIDGRLPHSLLLEILTDEGAGTMITG* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2530926 2532401 - Vvi4g258 Vvi4g258 785037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g258 383 PANTHER N-ACETYLGLUTAMATE SYNTHASE 81 383 - -
Vvi4g258 383 Hamap Acetylglutamate kinase [argB]. 121 376 IPR037528 GO:0003991|GO:0006526
Vvi4g258 383 Pfam Amino acid kinase family 122 359 IPR001048 -
Vvi4g258 383 PANTHER N-ACETYL GLUTAMATE KINASE 2 81 383 - -
Vvi4g258 383 Gene3D - 99 383 IPR036393 -
Vvi4g258 383 TIGRFAM argB: acetylglutamate kinase 123 358 IPR004662 GO:0005737
Vvi4g258 383 SUPERFAMILY Carbamate kinase-like 105 382 IPR036393 -
Vvi4g258 383 CDD AAK_NAGK-C 108 381 IPR041727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g258 K00930 argB; acetylglutamate kinase [EC:2.7.2.8] - vvi:100252493 652.514
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g258 . . . . . . . . Cmo05g00670 . . Cma05g00642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00587 Cpe11g00565 . . . . . . . . . . . . . . . Lsi08g01144 . Chy03g01175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009145 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34