Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g259 ATGGAGGCGGCCATGGACGATTCTCAAGCATCCGCCGCTGAATCACAGGCTCCACCACCCCCTTCCTCGCCGCCAATCCAAGAGGAAGACTCCGGAGATGATGATAGCTTGCAATCCAAGGTTCAGAAGCTCATGGAGAAGATCACTTCTTCCCCTGATAACCCTAACCCTAGTGTCCTCCATGCCCTTTCTTCCATCCTCGAAACCCAAGAATCCAGGTACATGGAAGAGACAGGTCATTCATCCTTAAATAATGGTCGTGCTACTCATATTATTGGACGGCTGGGTAGCCTAGTCCGGGACAATGATGATTTTTTTGAGTTGATATCTTCAAAGTTTCTGTCTGAAAGTAGATACTCAATATCTGTTCAGGCAGCTGCTGCAAGGCTTCTTCTAATCTGTTCCCTGACTTTGGTGTATCCCCATGTTTTTGAAGAAACTGTCGTCTTGGAGAATATAAAAAATTGGGTGATGGATGAGAATGCCAGATTTTCTGGTGAAGATCGCAGCTGGAAGAATGACTCAGGGAGAAAGGAGGCCTCAGATTCTGAAATGTTGAGAACCTACTCTACTGGACTTCTTGCTTTATGTTTGGCTGGTGGTGGTCAAGTAGTGGAAGACGTATTGACATCTGGATTATCCGCCAAGCTGATGCGTTACCTTCGTACCCGAGTCCTTGGGGAGACAAATACAAGTCAAAAAGACGGTAGTCATATAGCAGAGAGTAAGAATACGCCTGGTGCTACTTGCATGAGAGGTAGAGATGAAGGTCGCAGTAGATTGCGGCTGGTTCTGGAAACAAATCATTTAGATGATCCTAGGATAATAGACGAAGGGTCTTTACATGATCAGAGTGTTGAAAGGGATCATGATAGAAGCATTGGTTGGCAAACGCATGGAGAAGAACTTAAGGGGAAGGGAAGAGTCAATGAGGGGGCTATAGAGAATGAGCATGCTTTGACCTCTCCAGGATCTGGTAGTAGGCTAGGACAGGGGCGTAGTATCAGAGACCGGAGTTTGTCAAGAAATTTAGACACAAAAAGAGCACCAGATGCCAAGAAGTGTTTTGGCAGGACCATTGCTGATGGTTTTCCCATGGAAAGAGAAGATAATGATGACCGCTTCCAGGAATGCAAAGTTGGATCCAAGGATATCTCTGATCTGGTAAAGAAAGCAGTTAAATCTGCTGAAGCTGAAGCTAAAGAAGCCAATGCACCTCTCGAAGCCATCAAAGCAGCTGGTGATGCTGCTGCTGAAGTTGTCAAAAGTGCAGCTTTGGAGGAATTCAAAACCACCAATGATGAGGAAGCTGCAATTTTAGCTGCTTCAAAAGCTGCATCTACTGTCATTGATGCTGCTAATGCAATTGAAGTTTCAAGGAGCTCCAGTAATATGAATGCTGATCCAATGAATTCAAGAGGTACTGAAACAGAAATCAATGAAGAGGTTGAAGAATTTTTCATTATGGATGCTGACTCCCTTGCACAGTTGAGAGAAAAATACTGCATTCAGTGCCTTGAGATATTAGGGGAATATGTTGAGGTTCTTGGCCCTGTTCTACATGAAAAGGGTGTAGACGTCTGTCTTGCACTATTGCAACGAAGTTCGAAATTGAAAGAGGCGTCAAAGCTTGCAATGCTTTTGCCTGATGTGCTAAAGTTAATCTGTGCTTTGGCAGCTCACCGGAAATTTGCTGCAGTATTTGTGGATCGTGGTGGCATGCAAAAACTGCTTGCTGTCCCAAGAGTTGCTCTCACCTTCTTCGGTCTTTCTTCTTGCTTATTTACCATTGGTTCTCTTCAGGGGATTATGGAACGTGTTTGTGCTCTTCCTTCAGAAGTTGTCCACCAAGTGGTTGAGTTAGCTTTGCAACTTCTTGAGTGTTCCCAGGATCAAGCCAGAAAAAATGCAGCTTTATTTTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATTCCTTTGATGCTCAAGATGGTTTACAGAAGTTGTTGAGCCTTCTACATGATGCCGCCTCGGTACGATCTGGAGTTAATTCTGGTGGGTTAGGCTTGTCCAATTCAGGGTCACTTCGAAATGATCGATCACCTCCAGAAGTATTAACATCATCAGAGAAGCAAATAGCTTATCATACCTGTGTTGCTTTGCGACAATATTTCAGAGCACACCTTCTCCTGCTTGTGGATTCCATTCGGCCAAATAAAAACAATCGAAGTGCAGCCCGTAATTTGCCTAGTGTAAGGGCGGCATATAAGCCACTTGACCTCAGTAATGAGGCTATGGATGCAGTTTTTCTTCAATTACAGAAGGATCGGAAACTTGGTCCTGCATTTGTAAGAGCTCGTTGGCTTGCGGTTGATAAGTTCTTAACCTCTAATGGTCATATTACCATGCTGGAGTTGTGTCAGGCACCACCTGTTGAACGATATCTGCATGACTTGCTTCAATATGCATTGGGTGTTCTGCACATTGTTACATTGGTACCTTACAGCCGCAAGCTGATTGTAAATGTCACATTAAGCAATAATCGTGTTGGTATTGCAGTCATTTTAGATGCGGCAAATGGTGCTAGTTTTGTGGACCCTGAGATTATTCAGCCAGCATTAAATGTGCTAGTGAATCTTGTTTGCCCTCCACCTTCAATCAGCCTTAAACCCCCTGTTCTTGCACAAGGCCAGCAGTCTGCTTCTGTCCAAACCTCTAATGATCGAGGCAGCTCTGCTGTACTTAGATTAGTTGGAGACCGTAGAATATCTTTAGGCGCTGGAGCAGGGTGTGCTGGTCTTGCTGCACAATTGGAACAAGGATATCGTCAAGCAAGAGAGGCTGTCCGAGCCAATAGTGGTATAAAGGTTCTTTTGCATCTCCTCCAACCACGTATAGTTTCACCTCCTGCTACCCTTGACTGCCTTAGAGCTCTTGCATGCCGAGTCCTGCTGGGTTTAGCTAGAGATGATGCAATAGCACATATATTGACAAAGCTTCAGGTTGGGAAAAAGCTATCAGAACTAATCCGAGATTCAGGCAGCCAGACATCGGGAAATGAACAAGGCCGGTGGCAAGCTGAACTTGCCCAGGTGGCAATTGAGCTAATTGGGATTGTAACAAATTCAGGGCGTGCAAGTACATTAGCAGCTACAGATGCTGCTACCCCTACCTTGAGGCGCATAGAGAGAGCAGCTATAGCTGCTGCCACACCTATTACTTATCATTCCAGGGAACTCTTACTCCTTATCCATGAACACCTGCAGGCATCTGGTTTGAGCACAACTGCTGCTCAATTGCTTAAAGAGGCTCAGTTGACACCTTTGCCATCCTTGGCAGCCCCATCATCTCTCGTGCATCAAGCATCTTCCCAAGAAACTCCATCTATGCAACTTCAGTGGCCATCTGGTCGCATTGCTGGTGGATTTCTCTCCAATAAATTGAAGCCGACCACAAAGGATGAAGATTCCTGTTTGAATTCTGATTCATCTGTGTCTTCCTCAAAGAAGAAGCCACTGGTTTTCTCATCTACTCTCAGCTTTCAATTCAGAAATCAGCCTCAATCCCATGATGCCCAATCTCCAGCAATCAGCAAAGTTTTCAGTACTTCAAAAAAGTCTTCAGCACCTGCAAGTGTACCAGAAACTCCATCAGTAACTACATCAAAACCAAATTTGGATGCTGAGTCCCAATATAAGACTCCAATTATATTGCCAATGAAAAGGAAGCTAACGGAGTTAAAGGATGTCGGGTTGGCATCGTCAGTGAAGCGACTCAACACCAGTGAGCTTGGACTTCATTCACCTGTTTATCAATATGGGCGGCCAACACCAAGTAGTGTTCTAACTGATAACTTAGATGATAACCAATGTGGTATTCCTCATTTGGGTCAGATGACACCTTCTTCCTTCCAACTTGGATCTCTGAATGACCCACATACTGGCAACACCGAAAGGCTTACCCTCGACTCTCTTGTTGTCCAGTATCTAAAGCACCAGCATCGCCAGTGCCCAGCACCAATAACAACGTTACCACCACTCTCTCTCTTACACCCACATATTTGTCCTGAACCAAGACGAAGCCTTGATGCTCCATCAAATGTAACTGCCCGGCTTAGCACACGTGAGTTTAGAAATGTGCATGGTGGAATCCATGGAAACAGGAGGGATCGTCAATTCATTTACAGCAGATTCAGGCCCTGGAGAACTTGCCGGGATGATGGTAATGGCCTTTTGACATCTCTTGCTTTTCTAGGGGACTCTGCACAGATTGCAGCTGGAAGTCATTCTGGAGAGCTTAAATTTTTTGACTGCAACAGCAGCACTATGCTAGAGAGTTTCACAGGCCACCAGTATCCTTTGACACTAGTCCAACATCCATTTGATGGGTGCAAGGCTGCTAGATTTAGCAATTCTGGGACCATATTTGCAGCGCTATCATCAGAGTCATCTCGACGAGAAATTCTTGTTCCTTCAGACACCATGCTTCTCTGGAATGGGGTCTTATGGGATAGGCGAGGGTCTGGCCCTGTTCATCGTTTTGATCAGTTTACAGATTATGGGGGTGGGGGCTTCCATCCTGCTGGAAATGAGGTGATTATAAATTCTGAGGTCTGGGACCTCCGGAAGTTTAGGCTCCTCCGAACCGTGCCTTCGTTGGATCAAACAGTAATAACTTTTAATTCTCGTGGAGATGTGATTTATGCCATCCTGAGGAGAAATCTTGAGGACATAATGTCAGCAGTTCACAGCCGCCGTGCCAAGCATCCTCTCTTTTCTGCATTTCGCACTGTTGATGCTGTCAACTACTCTGACATTGCCACGATTACCGTAGACCGCTGTGTGCTTGACTTTGCAACAGAGCCAACCGACTCCTTTGTGGGGTTGGTTTCAATGGACGATCATGATGAGATGTTTTCTTCTGCTAGAATGTATGAAATTGGGCGGCGCAGGCCAACAGATGATGACTCTGATCCTGATGATGCAGAAAGCGAGGAAGATGATGAAGATGAGGATGAGGATGCAGATGAGGACCCATTACTGGGTCCTGCACTTGATGGGGATGGAGAGAGCGATGGTGATGACTTGAGCAATGATGATGACAGCTTGGGTGATTTTGAAGAGGATGACGACGATGATGATGATGGGGATTTTGTGATGGATGATGCTGACTTTGATGGGGGAGGTGGAATACTGGAGTTAGTGACGGAGGGAGATGAGGATGACAATGACAGTGAGGTGGTGGAATCCTTTAGCAGTGGTGATGAGGAAGATTTTGGGGACAATGGTTTCGGCTTCTAG 5283 45.45 MEAAMDDSQASAAESQAPPPPSSPPIQEEDSGDDDSLQSKVQKLMEKITSSPDNPNPSVLHALSSILETQESRYMEETGHSSLNNGRATHIIGRLGSLVRDNDDFFELISSKFLSESRYSISVQAAAARLLLICSLTLVYPHVFEETVVLENIKNWVMDENARFSGEDRSWKNDSGRKEASDSEMLRTYSTGLLALCLAGGGQVVEDVLTSGLSAKLMRYLRTRVLGETNTSQKDGSHIAESKNTPGATCMRGRDEGRSRLRLVLETNHLDDPRIIDEGSLHDQSVERDHDRSIGWQTHGEELKGKGRVNEGAIENEHALTSPGSGSRLGQGRSIRDRSLSRNLDTKRAPDAKKCFGRTIADGFPMEREDNDDRFQECKVGSKDISDLVKKAVKSAEAEAKEANAPLEAIKAAGDAAAEVVKSAALEEFKTTNDEEAAILAASKAASTVIDAANAIEVSRSSSNMNADPMNSRGTETEINEEVEEFFIMDADSLAQLREKYCIQCLEILGEYVEVLGPVLHEKGVDVCLALLQRSSKLKEASKLAMLLPDVLKLICALAAHRKFAAVFVDRGGMQKLLAVPRVALTFFGLSSCLFTIGSLQGIMERVCALPSEVVHQVVELALQLLECSQDQARKNAALFFAAAFVFRAVLDSFDAQDGLQKLLSLLHDAASVRSGVNSGGLGLSNSGSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKNNRSAARNLPSVRAAYKPLDLSNEAMDAVFLQLQKDRKLGPAFVRARWLAVDKFLTSNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPYSRKLIVNVTLSNNRVGIAVILDAANGASFVDPEIIQPALNVLVNLVCPPPSISLKPPVLAQGQQSASVQTSNDRGSSAVLRLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANSGIKVLLHLLQPRIVSPPATLDCLRALACRVLLGLARDDAIAHILTKLQVGKKLSELIRDSGSQTSGNEQGRWQAELAQVAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLSTTAAQLLKEAQLTPLPSLAAPSSLVHQASSQETPSMQLQWPSGRIAGGFLSNKLKPTTKDEDSCLNSDSSVSSSKKKPLVFSSTLSFQFRNQPQSHDAQSPAISKVFSTSKKSSAPASVPETPSVTTSKPNLDAESQYKTPIILPMKRKLTELKDVGLASSVKRLNTSELGLHSPVYQYGRPTPSSVLTDNLDDNQCGIPHLGQMTPSSFQLGSLNDPHTGNTERLTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHICPEPRRSLDAPSNVTARLSTREFRNVHGGIHGNRRDRQFIYSRFRPWRTCRDDGNGLLTSLAFLGDSAQIAAGSHSGELKFFDCNSSTMLESFTGHQYPLTLVQHPFDGCKAARFSNSGTIFAALSSESSRREILVPSDTMLLWNGVLWDRRGSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRTVPSLDQTVITFNSRGDVIYAILRRNLEDIMSAVHSRRAKHPLFSAFRTVDAVNYSDIATITVDRCVLDFATEPTDSFVGLVSMDDHDEMFSSARMYEIGRRRPTDDDSDPDDAESEEDDEDEDEDADEDPLLGPALDGDGESDGDDLSNDDDSLGDFEEDDDDDDDGDFVMDDADFDGGGGILELVTEGDEDDNDSEVVESFSSGDEEDFGDNGFGF* 1761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2534503 2547915 - Vvi4g259 Vvi4g259 785038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g259 1760 MobiDBLite consensus disorder prediction 316 346 - -
Vvi4g259 1760 MobiDBLite consensus disorder prediction 1729 1750 - -
Vvi4g259 1760 SUPERFAMILY WD40 repeat-like 1392 1565 IPR036322 GO:0005515
Vvi4g259 1760 MobiDBLite consensus disorder prediction 1111 1130 - -
Vvi4g259 1760 ProSiteProfiles LIS1 homology (LisH) motif profile. 1070 1102 IPR006594 GO:0005515
Vvi4g259 1760 SUPERFAMILY ARM repeat 181 957 IPR016024 -
Vvi4g259 1760 MobiDBLite consensus disorder prediction 231 253 - -
Vvi4g259 1760 MobiDBLite consensus disorder prediction 42 59 - -
Vvi4g259 1760 MobiDBLite consensus disorder prediction 1178 1221 - -
Vvi4g259 1760 MobiDBLite consensus disorder prediction 1137 1163 - -
Vvi4g259 1760 MobiDBLite consensus disorder prediction 320 337 - -
Vvi4g259 1760 SMART Lish 1070 1102 IPR006594 GO:0005515
Vvi4g259 1760 MobiDBLite consensus disorder prediction 1652 1716 - -
Vvi4g259 1760 MobiDBLite consensus disorder prediction 1111 1128 - -
Vvi4g259 1760 PANTHER VPRBP PROTEIN-RELATED 1164 1452 IPR033270 GO:0016567
Vvi4g259 1760 PANTHER VPRBP PROTEIN-RELATED 31 1165 IPR033270 GO:0016567
Vvi4g259 1760 PANTHER VPRBP PROTEIN-RELATED 1453 1483 IPR033270 GO:0016567
Vvi4g259 1760 PANTHER VPRBP PROTEIN-RELATED 1484 1639 IPR033270 GO:0016567
Vvi4g259 1760 Gene3D - 1468 1653 IPR015943 GO:0005515
Vvi4g259 1760 MobiDBLite consensus disorder prediction 1638 1760 - -
Vvi4g259 1760 MobiDBLite consensus disorder prediction 1 59 - -
Vvi4g259 1760 PANTHER BNAA03G51310D PROTEIN 1164 1452 - -
Vvi4g259 1760 PANTHER BNAA03G51310D PROTEIN 31 1165 - -
Vvi4g259 1760 PANTHER BNAA03G51310D PROTEIN 1453 1483 - -
Vvi4g259 1760 PANTHER BNAA03G51310D PROTEIN 1484 1639 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g259 K11789 DCAF1, VPRBP; DDB1- and CUL4-associated factor 1 [EC:2.7.11.1] - vvi:100254299 2923.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g259 . . . Bda03g00046 . . Bma04g00046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005904 2 1 2 2 2 1 2 1 2 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 39