Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi4g26 | ATGACAAGTTCAGTTCATAACTTCGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATTGGAGCTGCAAAAGGCCTATGCCACATGCATGAAAACTGCTCTGCCCCGATCATACACCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAACGCGAAAATTGCGGATTTTGGATTGGCCAAGATGTTGGTCAAGCAAGGAGAGCCCGACACCATGTCAGGAATTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACGAGAAGATCGATGTATATAGCTTTGGAGTAGTCCTGCTTGAGCTAGTGACGGGGAGAAAACCCAACAGCGGGGACGAGCACATGTGCCTTGTAGAATGGGTATGGGATCAGTTCAGAGAAGGGAAAACCATTGAGGAAGTGATGGATGAGGAGATCAAGGAACAATGTGAAAGAACACAAGTGACCACTCTCTTTAGTCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAAGAGGTTTTGGAAATTCTTCGACAGTATGAATCCATGCTTGGTGGTAGTATGCTTATTGATGATAGTCTGGAGATGTGGAAATCAAATGATTCTGATGAACTAAATTTGATGTGTGATGAGATAGATGACGTGTTATCTAAGGATCACAAACATGAGTATACAAGAAAGGTCAATGCAAAGATCAATGCCTACAATCTTGAAATTGCACTTCTAGAGTTGGGCCCTAAAAGAAAACCCAATAGGGGGAAGGGGCAGCATTTAAACCTTGTAATTTCCCAAAATTTGGACGATGAACGATCAATCCTACTAGACGTTAAACAACAACTGGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTCGCCCTGTGATTGGCGGGAAATTACATGCACCGACAATACCGTCACTGCAATTTCACTCCACAATAAGACCATCAGAGAGAAAATTCCAGCCACAATTTGTGACCTCAAGAACCTCATCTTGAAATATCTGTGGATGACGCAGGCGAATTTGATTGGCGAAATACCGGAGAGCTTCAACCATCTGTCGAGTCTGGAACACTTGGATCTCTCACTCAACAAATTAGAAGGTACGATCCCTGGAGTCATGCTTACGTTGAAGAATTTGACCAATTTGTATTTATTCAATAATAGATTGTCCGGCCGCATTCCTTCATCCATAGAAGCTCTCAACTTGAAAGAAATTGATCTTTCCAAGAACCATTTGACGGGGTCGATACCAGCGGGTTTCGGGAAGCTACAAAATTTGACCGCATTTGGCCTTCATTCGGAGCTCAAACGCTTTGAGGTTTCCAAGAATAAACTAAGCGGGGAATTACCTCAACATTTATGCGCTAGGGGGGCTTTGCTTGGAGTGGTTGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCAAGTCCCTCGGGAATTGCACAAGTTTGCTCACCATTCAGCTTTCCAACAATCGCTTTTCAGGTGAGATTCCTTCCGACATCTGGACATCCCCGGACATGATATGGGTGATAGTGGAGATCAGTAACAACAAGTTTTCTGGAAAAATTCCAGTGGAATTGACCAGTCTTCGGAACATCTCTGTTATGTTGCTTGATGGGAATCAATTCTCGGGTGAGCTTCCATCCGAGATCATCTCATGGAAGTCGCTCAATAATTTGAATCTCTCAAGAAACAAACTTTCTGGCCCAATTCCCAAGGCATTAGGTTCTTTACCTAACCTTAATTACCTTGACCTGTCAGAAAACCAGTTCTCAGGTCAAATTCCTCCTGAACTTGTCGTTGACTCCGACAAATTGTCAACCAAATATCTCATTATGATCCTAATTTTTCTTCAGAAACAATTCATAGCAGAAGTCGAGATATTGGGCACCATACGCCATTCCAATATAGTGAAGTTGTTGTGCTGCATATCGAATGAAAGCTCAAGCCTTCTTGTTTATGAGTACATGGAGAAGCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACAACGTCCATGACAAGTTCAGTCCATAACTTTGTCTTGGATTGGCCAACAAGGTTGCAGATTGCTATCGGAGCTGCAAAAGGCCTATGCCACATGCATGAAAACTGCTCTGCCCCGATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAAAGCAAAAATTGCGGATTTTGGATTGGCCAAGATGTTGGTCAAGCAAGGAGAGCCCGACACCATGTCAGGAATTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACGAAAAGATCGATGTATATAGCTTTGGAGTAGTCCTGCTTGAGCTAGTGACGGGGAGAGAACCCAACAACGGGGACGAGCTCATGTGCCTTGTAGAATGGGCATGGGATCAGTTCAGAGAAGGGAAAACCATTGAGGAAGTGATGGATGAGGATATCAAGGAACAATGTGAAAGAGCACAAGTGACCACTCTCTTCAGTCTAGGCCTCATGTGCACCACCAGATCACCAGCCACTAGGCCCACAATGAAGGAAGTTTTGGAAATTCTTCGACAATGCAGTCCTCAGGAGGGCCATGGAAGAAAGAAAAAGGACCATGAAGTTGCACCCTTACTTCAAAATGGCACTTGCCCCGCTACTTACAAGCATAACGAGAAGGGATCAGACAATGAGGATGACGATAAATTAAAAGATATCATCCTCGAAAAGTTGGAAATGATCGTGTTATTGTGCTCATACAATTCGAACCAAAATATACGCAACAACTCTTAA | 2835 | 44.13 | MTSSVHNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKQGEPDTMSGIAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGRKPNSGDEHMCLVEWVWDQFREGKTIEEVMDEEIKEQCERTQVTTLFSLGLMCTTTLPSTRPTMKEVLEILRQYESMLGGSMLIDDSLEMWKSNDSDELNLMCDEIDDVLSKDHKHEYTRKVNAKINAYNLEIALLELGPKRKPNRGKGQHLNLVISQNLDDERSILLDVKQQLGNPPSLQSWNSSSSPCDWREITCTDNTVTAISLHNKTIREKIPATICDLKNLILKYLWMTQANLIGEIPESFNHLSSLEHLDLSLNKLEGTIPGVMLTLKNLTNLYLFNNRLSGRIPSSIEALNLKEIDLSKNHLTGSIPAGFGKLQNLTAFGLHSELKRFEVSKNKLSGELPQHLCARGALLGVVASNNNLSGEVPKSLGNCTSLLTIQLSNNRFSGEIPSDIWTSPDMIWVIVEISNNKFSGKIPVELTSLRNISVMLLDGNQFSGELPSEIISWKSLNNLNLSRNKLSGPIPKALGSLPNLNYLDLSENQFSGQIPPELVVDSDKLSTKYLIMILIFLQKQFIAEVEILGTIRHSNIVKLLCCISNESSSLLVYEYMEKQSLDRWLHGKKQRTTSMTSSVHNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDVKSSNILLDAEFKAKIADFGLAKMLVKQGEPDTMSGIAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNNGDELMCLVEWAWDQFREGKTIEEVMDEDIKEQCERAQVTTLFSLGLMCTTRSPATRPTMKEVLEILRQCSPQEGHGRKKKDHEVAPLLQNGTCPATYKHNEKGSDNEDDDKLKDIILEKLEMIVLLCSYNSNQNIRNNS* | 945 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 324759 | 362232 | + | Vvi4g26 | Vvi4g26 | 784805 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi4g26 | 944 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 37 | 49 | IPR008271 | GO:0004672|GO:0006468 | |
| Vvi4g26 | 944 | Gene3D | Phosphorylase Kinase; domain 1 | 616 | 668 | - | - | |
| Vvi4g26 | 944 | PANTHER | KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN | 1 | 189 | - | - | |
| Vvi4g26 | 944 | PANTHER | KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN | 268 | 341 | - | - | |
| Vvi4g26 | 944 | PANTHER | KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN | 629 | 889 | - | - | |
| Vvi4g26 | 944 | PANTHER | KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN | 522 | 611 | - | - | |
| Vvi4g26 | 944 | PANTHER | KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN | 439 | 523 | - | - | |
| Vvi4g26 | 944 | PANTHER | KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN | 342 | 439 | - | - | |
| Vvi4g26 | 944 | SUPERFAMILY | Protein kinase-like (PK-like) | 630 | 871 | IPR011009 | - | |
| Vvi4g26 | 944 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 723 | 735 | IPR008271 | GO:0004672|GO:0006468 | |
| Vvi4g26 | 944 | Gene3D | Transferase(Phosphotransferase) domain 1 | 3 | 196 | - | - | |
| Vvi4g26 | 944 | Gene3D | Transferase(Phosphotransferase) domain 1 | 669 | 897 | - | - | |
| Vvi4g26 | 944 | Gene3D | Ribonuclease Inhibitor | 326 | 608 | IPR032675 | - | |
| Vvi4g26 | 944 | Gene3D | Ribonuclease Inhibitor | 268 | 325 | IPR032675 | - | |
| Vvi4g26 | 944 | Pfam | Leucine rich repeat | 357 | 400 | IPR001611 | GO:0005515 | |
| Vvi4g26 | 944 | Pfam | Leucine rich repeat | 565 | 602 | IPR001611 | GO:0005515 | |
| Vvi4g26 | 944 | SUPERFAMILY | L domain-like | 285 | 614 | - | - | |
| Vvi4g26 | 944 | SUPERFAMILY | Protein kinase-like (PK-like) | 9 | 185 | IPR011009 | - | |
| Vvi4g26 | 944 | Pfam | Protein kinase domain | 19 | 183 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi4g26 | 944 | Pfam | Protein kinase domain | 631 | 869 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi4g26 | 944 | Pfam | Leucine rich repeat N-terminal domain | 275 | 311 | IPR013210 | - | |
| Vvi4g26 | 944 | Pfam | Leucine Rich Repeat | 412 | 434 | IPR001611 | GO:0005515 | |
| Vvi4g26 | 944 | ProSiteProfiles | Protein kinase domain profile. | 1 | 192 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi4g26 | 944 | SMART | serkin_6 | 610 | 870 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi4g26 | 944 | ProSiteProfiles | Protein kinase domain profile. | 591 | 890 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi4g26 | 944 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 342 | 439 | - | - | |
| Vvi4g26 | 944 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 1 | 189 | - | - | |
| Vvi4g26 | 944 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 268 | 341 | - | - | |
| Vvi4g26 | 944 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 629 | 889 | - | - | |
| Vvi4g26 | 944 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 522 | 611 | - | - | |
| Vvi4g26 | 944 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 439 | 523 | - | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 76618 | PF00069 | Pkinase | 7.00E-39 | CL0016 | Vvi | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi4g26 | - | K00924 | vvi:100250973 | 583.178 |