Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g264 ATGGTGCTTGGGGAAAGATTGGGCGACAAGAGCGATTCTAGATTTTGTGGGGTTGAGACTGAGTTCCAGGAGGACATGCCTCAACTTTTGTCGTTCAATCTATCATCATCTGCGGCCTTTGATTTCGTTGTTGCTCCTGTGATGGATCCGACTTATAGACCAAGCTTGATGGTTAATGATCGTAACAGGTCTGGTGTTCTGCCTGTTGCAGGGTCAGACCTAGTTTTGAGCCCTGCCCAATGGAGTAGTCATGTTGTGGGAAAACTTAGCTCTTGGATTGACTTGGATTCAGAAGATAAGATACTCCGGCTGGATTCTGAAATCACTCTGAAGCAAGAAATAGCGTGGGCTTCTCATCTCTCCCTACAGGCATGCCTTCTTCCTACTCCAAGAGGAGCATCCTGTGCTAATTATGCTAGGTGTGTGAATCAGATTTTACAGGGCTTAAACAATATGCAGTTGTGGCTTAGGATTCCCTTGGAGAAGACTGATGATGATGCTATGGATGGGACACATGATGATTTGAATGGAGGGCAAACGGATTCTTGGGAACTATGGAACTCATTTCGCCTTCTTTGTGAACATCACAGTCAACTGTTCATCGCCTTAGATGTTTTGAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCATAATTCATACCAATTCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAGAAGCTGCTGACTGCATTTTTTAACCATTCAATTCAGATGGTGCTTTCTGGAAAACCAGTACATAGTCTCCCCAAGGGAAGTTTGGAACTAGGTTCTAATGATGCTGATGGTATTCAGAGACATCCCTTGAGATCATATTTGGACTATGTTGGTTATCTCTATCAGAGGATGGATCCTCTTCCTGAACAAGAACGATTTGAGCTTGGTTATAGGGATTTCTTGCAGTCTCCATTGCAGCCTCTCATGGATAATCTAGAGGCACAAACATATGAGACATTTGAGAAAGATACAATGAAATACATTCAGTACCAAAGAGCAGTCTGTAAAGCTTTGTTAGATAGGGTCCCTGATGAAAAAGCATCCATTGTAACCACAGTACTGATGGTGGTGGGAGCAGGTCGTGGACCTCTGGTTAGAGCGTCATTGCAGGCTGCTGAAGAAACCGGACGTAAGTTGAAAGTTTATGCTGTGGAGAAAAATCCAAATGCAGTTGTTACACTTCATAGTCTGGTTAAACTAGAGGGATGGGAAAACATTGTTACCATAGTTTCTTGTGATATGCGTCAATGGGATGCTCCTGAGAAAGCTGACATTTTGGTTAGTGAGTTGCTGGGTTCTTTTGGTGACAATGAGCTGTCTCCTGAGTGTCTTGATGGAGCTCAAAGATTTTTGAAGCAAGATGGAATTTCAATACCATCATCGTACACAAGTTTCATACAACCAGTGACTACATCAAAACTATACAATGATGTTAAGTTACATAAAGATCTTGTGCACTTTGAAACTGCTTATGTTGTCAAACTGCACAATGTAGCAAGGCTTGCTCCTTGTAAACCGGTTTTTACATTTACTCATCCGAATTACTCAACCGAGAAAAGCAATCAACGTTATAAGAAGCTACAGTTTGAGACACTTAGTGACACTGGATCAGCCATGGTGCACGGATTTGCTGGCTATTTTGATGCAACTCTTTACAAAGATGTACATCTTGGTATTGAACCATCGACGGCAACTCCAAACATGTTCAGCTGGTTTGCAATATTTTTTCCACTGAGAACACCGGTTTGCATACAACCAGGTTCTACTTTAGAAGTTCACTTTTGGCGTTGTTGTGGTGCTACCAAGGTTTGGTATGAATGGTGTGTAACATCTCCTACCCCTTCTCCAATTCACAACTCGAATGGTCGTTCATATTGGGTTGGACTCTAG 1953 42.7 MVLGERLGDKSDSRFCGVETEFQEDMPQLLSFNLSSSAAFDFVVAPVMDPTYRPSLMVNDRNRSGVLPVAGSDLVLSPAQWSSHVVGKLSSWIDLDSEDKILRLDSEITLKQEIAWASHLSLQACLLPTPRGASCANYARCVNQILQGLNNMQLWLRIPLEKTDDDAMDGTHDDLNGGQTDSWELWNSFRLLCEHHSQLFIALDVLSSLPSANSLGRWFGEPVRAAIIHTNSFLTNARGHPCLSKRHQKLLTAFFNHSIQMVLSGKPVHSLPKGSLELGSNDADGIQRHPLRSYLDYVGYLYQRMDPLPEQERFELGYRDFLQSPLQPLMDNLEAQTYETFEKDTMKYIQYQRAVCKALLDRVPDEKASIVTTVLMVVGAGRGPLVRASLQAAEETGRKLKVYAVEKNPNAVVTLHSLVKLEGWENIVTIVSCDMRQWDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTTSKLYNDVKLHKDLVHFETAYVVKLHNVARLAPCKPVFTFTHPNYSTEKSNQRYKKLQFETLSDTGSAMVHGFAGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIQPGSTLEVHFWRCCGATKVWYEWCVTSPTPSPIHNSNGRSYWVGL* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2582426 2595604 + Vvi4g264 Vvi4g264 785043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g264 650 Gene3D - 14 311 - -
Vvi4g264 650 Pfam PRMT5 arginine-N-methyltransferase 310 479 IPR035075 -
Vvi4g264 650 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 650 - -
Vvi4g264 650 Gene3D - 482 650 - -
Vvi4g264 650 PIRSF PRMT5 3 650 IPR007857 GO:0006479|GO:0008168|GO:0035246
Vvi4g264 650 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 322 628 IPR025799 GO:0016274|GO:0018216
Vvi4g264 650 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 1 650 IPR025799 GO:0016274|GO:0018216
Vvi4g264 650 Pfam PRMT5 TIM barrel domain 40 304 IPR035247 -
Vvi4g264 650 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 337 649 IPR029063 -
Vvi4g264 650 Pfam PRMT5 oligomerisation domain 482 648 IPR035248 -
Vvi4g264 650 Gene3D Vaccinia Virus protein VP39 314 481 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g264 K02516 PRMT5, HSL7; type II protein arginine methyltransferase [EC:2.1.1.320] - vvi:100242249 1322.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g264 . . . . . . . . . . Cma01g01558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01605 . . . . . . Cpe02g00409 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010530 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32