Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g269 ATGAGTCGACCGAGTACGCGCAGCAGCAAGAATAAAAGACATCGGGCGGACGACAATGCTGCAACTACTTGCCAAATATACAGGAAAATTCATTCGACGGGGGAGGTGACCAAGGACGATGCGAATCAGTTGTATATGATTTGGAAGCCTATTTGTCAAGGTTGTCGAGTGAATACAAAAGATAACCCCAACTGTTTTTGTGGTCTCATTCCGCCTCCCAATGGAAGCCGAAAGTCCGGGTTATGGCAGAAAATGTCCGACGTGGTTCTGGCACTCGGTCCTGATCCTTTCAAGGATCTCCGAGCTTCGTCGGAGTATTCCCCCGCGGGCCTCACCAACCTTGGCGCCACTTGCTACGCCAACAGCATTCTCCAATGCCTGTACATGAACAAGACTTTCAGACGAGGTCTTTTCTCTGTTGAACCGGGTCTTTTGAAACAATATCCAGTTCTTGATCAACTTGCCAGGCTTTTTGCACAGCTGCACGCCAGTAAACTGGCTTTTATAGACTCTGCTCCCTTTATTAAAACGCTAGAGTTAGATAATGGCGTTCAACAGGATAGCCATGAGTTTCTTACCTTACTTCTTTCTTTGCTTGAGCGATGTCTCAGCCATTCTCAAGTTTCAAGAGCCAGAACCATTGTTCAGGACCTTTTCCGAGGAAGTGTGTCGCATGTCACCACGTGCTCAAAATGCGGAAAAGATTCTGAAGCTTCCTCGAATATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAGGGTTTGAAAAGTTTAGACGAGAGTTTAAATGATTACCTTAGTGTGGAAGAGCTTCATGGAGATAACCAATATTTTTGTGAGTCATGTGGAACAAGAGTTGACGCCACCCGTAGCATTAAGTTACGCACACTGCCTTATGTCCTTAATTTCCAGCTCAAGCGCTGTGTTTTCCTTCCAAAGACTACAACAAAGAAGAAAATCACTTCTGCATTCTGTTTTCCTGGAGAATTGGATATGAGAGAGAGGCTATCTGAACCTTCTGATTTGGAACTAATATATGACTTGTCAGCTGTGCTGATTCACAAGGGGACTACTGTGAACAGTGGCCATTACATAGCTCATATTAAGGATGAGAATACAGGGCAATGGTGGGAATTTGATGATGAGCATGTCTCAAACCTGGGTCATCACCCATTTGGAGAGGGGTCTTCAAGTTCTGCTGCTAAACCTCTACAATCTTCAGAATGTAGTATTGTTAGTGGTTCACAGACATACTCATCTGGTGATGCATACATGTTGATGTATAATCTTAGGCGTACCACCAAGAGTGACAATGATGCTGCTCTTCCAGCTCATCTTTATGAAGAGATAAAAGAACTAAATGCCTCGTATCTTGATGCTTGTCAACAATACAAATCAAAGAAGGAAAGAGAGTTGGATTGTATCACAGAACGGAGGCAGGAAGTGCGATCGGTTCTTTCTGAAGGCCCTGTTCTATCACTTGAGGATCCATATTTTTGGATTTCTACAGACTGGCTTCGCCTGTGGGCTGACAACATCACTCCACCTGTTCTTGACAACACCCCTATCCAGTGCTTGCATGGAAAAGTCCCAGTATCAAAAGTTGGTTCCATGAAGCGCTTGTCATCTAAAGCTTGGAACATGTTGTTCTCTAAGTATGGAGGGGGACCTGCACTGTCAAATGATGACTACTGCATCAATTGCCTTGTGGAAGGGGCTAGCACTATGGTTTCTGCTGATAACTATAGGGATCGGCGAAAAGTAATGAAAGAACTTGCTGATGCAGTACACTCAGGGAAGTGTCTAGATGGAAATTTGTACTATGTTTCAAAATCATGGTTCCAACAGTGGGCACGCAGAAAAATCATTGACTCACCATGCGATGCTGATGCAGGACCAACAGCTTCAATTAGATGCCCTCATGGGAAACTTATGCCTGAGCAAGCTCCTGGTGCTAAGCGTTTGCTGGTTCCTGAAAATCTCTGGCTCTTCTTCTGTGAAAGTGCTAACACAGTCAAACCTGATGATACCTTGGGCTGTTCAGTTTTTCCTTCAGATGTGGAACCATGTGCTACATGCAGTATGGAGCTTACGGAAGTGGCAAGCATAGAAGATACACTAAGAGAATTCAAGCTCAAACAGCGTCAGAATCATGAAAAAATAGCATTGGGAAAAGGTTTTGCACTTTCTTCACATTGCAAGTATTATTTGCTGCCCTCTTCATGGCTGTCAACATGGAGAAGCTACATCAATGCAAATGGAAAGAATGTTTCATCATCAGTGCAACCTGAAATGTTAGATAGTGTCATTGATATGATGAAATGTGGAAAACATTCAAGGCTTCTGGAAAGACCTCTTGAACTGATTTGCAAACGTGGCACGATTTTCCAAAGGTTTTCTGCTACAGATGGGTTAACAATCATAACTAAGGATGATTGGAAATTCTTCTGTGAGGAGTGGGGCTGTACTGAAGAGATGGGCATCTCCGCTGAAATTGAGTTCAGTAACTGTGTGGCAAATAATTTAGCTGGGTCCTGCGAAGAAATGCCAATTATTGAGGAGCATATGAGTCCTCATGATGAAGTGAATGAGGAAATTGAGTCTAGACAACCTGTGATTAAGACTTCTCCTGAGGTATGTGAGGTTTGCATTGGAGAAAGAGAAAGCTGTGAGTTAATGCAAAAACTTAACTATTGCAACGAGGATATACGTGTCTGCTTTGTACGTGGTAAGGAAGCTCCTAAATCAATTTTAGAAGCATCTGGGACCATTTCTGAGCCAGATCGCCGAATCTCTAAGCGCTCTCGAAAGACAAATTTTGGAAATTCGATAAATCTGAAAGTTTCTGGGTCCACATCAATCTACCAGTTAAAAATGATGATATGGGAATCCTTTGGGGTAATTAAGGAAAACCAGATACTTCACAAGGGTTCTACAGTAATTGATGGTGAAACTTCCACTCTTGCTGACATGAATATATTTCCTGGAGATCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAGATGAGCTCTCTGACCATAAAATGGAGGTGCAACAGGCTGAGGAAGGGTTCCGGGGAACGCTTTTGACATCAAATATCTCGTCCCAGGTTGTCTAA 3135 43.13 MSRPSTRSSKNKRHRADDNAATTCQIYRKIHSTGEVTKDDANQLYMIWKPICQGCRVNTKDNPNCFCGLIPPPNGSRKSGLWQKMSDVVLALGPDPFKDLRASSEYSPAGLTNLGATCYANSILQCLYMNKTFRRGLFSVEPGLLKQYPVLDQLARLFAQLHASKLAFIDSAPFIKTLELDNGVQQDSHEFLTLLLSLLERCLSHSQVSRARTIVQDLFRGSVSHVTTCSKCGKDSEASSNMEDFYELELNVKGLKSLDESLNDYLSVEELHGDNQYFCESCGTRVDATRSIKLRTLPYVLNFQLKRCVFLPKTTTKKKITSAFCFPGELDMRERLSEPSDLELIYDLSAVLIHKGTTVNSGHYIAHIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSAAKPLQSSECSIVSGSQTYSSGDAYMLMYNLRRTTKSDNDAALPAHLYEEIKELNASYLDACQQYKSKKERELDCITERRQEVRSVLSEGPVLSLEDPYFWISTDWLRLWADNITPPVLDNTPIQCLHGKVPVSKVGSMKRLSSKAWNMLFSKYGGGPALSNDDYCINCLVEGASTMVSADNYRDRRKVMKELADAVHSGKCLDGNLYYVSKSWFQQWARRKIIDSPCDADAGPTASIRCPHGKLMPEQAPGAKRLLVPENLWLFFCESANTVKPDDTLGCSVFPSDVEPCATCSMELTEVASIEDTLREFKLKQRQNHEKIALGKGFALSSHCKYYLLPSSWLSTWRSYINANGKNVSSSVQPEMLDSVIDMMKCGKHSRLLERPLELICKRGTIFQRFSATDGLTIITKDDWKFFCEEWGCTEEMGISAEIEFSNCVANNLAGSCEEMPIIEEHMSPHDEVNEEIESRQPVIKTSPEVCEVCIGERESCELMQKLNYCNEDIRVCFVRGKEAPKSILEASGTISEPDRRISKRSRKTNFGNSINLKVSGSTSIYQLKMMIWESFGVIKENQILHKGSTVIDGETSTLADMNIFPGDLLWVKDSEIHEYRDIADELSDHKMEVQQAEEGFRGTLLTSNISSQVV* 1045
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2624576 2635776 - Vvi4g269 Vvi4g269 785048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g269 1044 Gene3D - 704 829 IPR035927 -
Vvi4g269 1044 Gene3D Cysteine proteinases 97 431 - -
Vvi4g269 1044 SUPERFAMILY DUSP-like 477 562 IPR035927 -
Vvi4g269 1044 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 109 431 IPR028889 -
Vvi4g269 1044 SMART dusp 491 562 IPR006615 GO:0004843
Vvi4g269 1044 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 110 125 IPR018200 GO:0004843|GO:0006511
Vvi4g269 1044 Gene3D - 936 1001 - -
Vvi4g269 1044 ProSiteProfiles DUSP domain profile. 473 565 IPR006615 GO:0004843
Vvi4g269 1044 ProSiteProfiles DUSP domain profile. 709 837 IPR006615 GO:0004843
Vvi4g269 1044 SUPERFAMILY Cysteine proteinases 106 436 IPR038765 -
Vvi4g269 1044 SUPERFAMILY Ubiquitin-like 938 1001 IPR029071 -
Vvi4g269 1044 CDD Peptidase_C19L 110 428 IPR033841 GO:0004843
Vvi4g269 1044 Coils Coil 1009 1029 - -
Vvi4g269 1044 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 433 - -
Vvi4g269 1044 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 436 956 - -
Vvi4g269 1044 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 436 956 - -
Vvi4g269 1044 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 433 - -
Vvi4g269 1044 ProSiteProfiles DUSP domain profile. 580 683 IPR006615 GO:0004843
Vvi4g269 1044 CDD Ubl_USP48 936 1037 IPR044743 GO:0004197|GO:0004843|GO:0016579
Vvi4g269 1044 Pfam Ubiquitin carboxyl-terminal hydrolase 110 428 IPR001394 GO:0004843|GO:0016579
Vvi4g269 1044 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 346 364 IPR018200 GO:0004843|GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g269 - - K11858 vvi:100259355 2096.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g269 . . . Bda03g00459 . . . . Cmo05g00665 . . . . . Sed01g1313 . . Bhi04g01060 Tan02g2655 Cmetu03g1138 . . . . . . . . . . . . . . . Lsi04g02276 . . Cme03g01678 . . . Bda13g01355 . Bpe04g00420 . . . . . . . . Car05g00581 Cpe11g00560 . . . . . . . . Cla08g01169 Cam08g1632 Cec08g1206 Cco08g1329 Clacu08g1330 . Cre08g1114 . . Chy03g01302 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005534 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 5 1 40