Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g27 ATGCCGAAACTACCCTTATTATTTGCCACAACTCCATTCCCCACCCTGTTCTTCCTCCTCATCCTCTCCATATTTCAGGTAATTTCTCAAAATTTGGACGATGAACGATCAATCCTACTAGACGTTAAACAACAATTGGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTTGCCTTGTGATTGGCCGGAAATTACATGCACCGACAATACCGTCACTGCAATTTCACTCCACAATAAGACCATCAGAGAGAAAATTCCAGCCACAATTTGTGACCTCAAGAACCTCATCGTACTTGACCTCTCCAACAATTACATTGTCGACCTCACCGCAAACAACTTCTCTGGAGATATTCCCGCAGCAATTGGGAGGCTACGGGAACTGTTCTACTTGTTTCTGGTTCAAAATGAGTTCAACGGCACCTGGCCAACGGAGATAGGCGAATTTGATTGGCGAAATACCGAAGAGCTTCAACCATCTGTCGAGTCTAGAACACTTGGATCTCTCACTCAACAAATTAGAAGGTACGATCCCTGGAGGTTTTGGGAAGCTACAAAATTTGACCGGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCACATTTGGCCTTCATTCAGAGCTCAAACGTTTTGAGGTTTCCGAGAATAAACTAAGCGGGGAATTACCTCAACATTTATGCGCTAGGGGGGTTTTGCTTGGAGTGGTTGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCAAGTCTCTCGGGAATTGCAGAATGGAGATTAGTAACAACAAAAACAAACTTTCTGGCCCAATTCCCAAGGCATTAGGTTCTTTACCTAACCTCAATTACCTTGACTTGTCAGAAAACCAGTTCTCGGGTCAAATTCCTCCTGAACTTGGTCATTTGACGCTTAATATCCTCGATCTATCATTCAACCAACTCTCTGGGATGCTGTGTGTCAATGTTGGCACTCTGAAACTCCCTAGATGTGATGCCAAAGTCGTTGACTCTGACAAATTGTCAACCAAATATCTCGTTACTCAATTCCAAACACTAGATTTCAATGAACAGTACATATTGACCAATTTGACAGAAAATAATTTGATCGGACGCGGTGGGTCAGGGGAAGTATACCGAATTGCTAATAACCGTTCTGGTGAACTCCTGGCGGTTAAAAAGATTTGTAATAACAGGAGATTGGATCACAAGTTTCAGAAACAATTCATAGCAGAAGTCGAGATATTGGGCACCATACGCCATTCCAATATAGTGAAGTTGTTGTTCCATAACTTTGTCTTGGATTGGCCAACAAGGTTGCAGATTGCTATCGGAGCTGCAAAAGGCCTATGCCACATGCATGAAAACTGCTCTGCCCCGATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAACGCGAAAATTGCGGATTTTGGATTGGCCAAGATGTTGGTCAAGCAAGGAGAGGCCGACACCATGTCAGGAGTTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACGAGAAGATCGATGTATATAGCTTTGGAGTAGTCCTGCTTGAGCTAGTGACGGGGAGAGAACCCAACAGCAGGGACGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAATTCAAAGAAGAAAAAACCATTGAGGAAGTGATGGATGAGGAGATCAAGGAACAATGTGAAAGAGCACAAGTGACCACTCTCTTCAGTCTAGGCCTCATGTGCACTACCAGATCACCATCCACTAGGCCCACAATGAAGGAGGTTTTGGAAATTCTTCGACAGTGCAGTCCTCAGGAGGGCCATGGAAGAAAGAAAAAGGACCATGAAGCTGCACCCCTGCTTCAAAATGGCACTTACCCCGCTACTTACAAGCCTTGCTTTCATGACTTCCAACAGTTGCTTCATCTTTCTCCTCATTCATGTACACCTTTTCAAAGTATTCAGTGGAGATTGGCCCATCAATCACTCTTTCCATACGTTAAACAACAACTAGGCAATCCACCGTCACTCCAATCATGGAATTCCTCATCCTCGCCCTGTGATTGGTCGGAAATTACATGCACTAACAATACCGTCACTGCAATTTCACTCCACAATAAGACCATCAGAGAGAAAATTCCAGCCACAATTTGTGACCTCAAGAACCTCATCGTACTTCACCTCTCCAACAATTACATTCCCGACGAGTTCTCGGATATTCTCAATTGTTCCAAGCTTGAGTATCTACTCTTGTTGCAAAACTCCTTTGTGGGTCCAATTCCAGCTGATATAGATCAACTTTCACGTCTCTGGTACCTAGACCTCACCGCAAACAATTTCTCTGGAGATATTCCCGCAACAATTGGGCGGCTATGGGAATTGTTCTACTTGTTTTTAGTCCAAAACGAGTTCAATGGCACCTGGCCAACGGAGATTGGTAATTTGGCGAATCTTGAACATTTGGCCCTGGCCTATAATGAGAAATTCCTCCTTTCAGCCTTTCCAAAGGAGTTTGGCACATTGAAAAAACTGAAATATCTATGGATGAAACAGGCGAATTTGATCGCAGAAATACCGAAGAGCTTCAACAATCTATGGAGTTTGGAACACTTGGATCTCTCACTCAACAAATTGGAAGACATGATCACGGGAGACATCATTATGTTGAAGAATTTGACTAATTTCCTCATTCCTACACTGGAAACCTTCAAAGTTTTTGGCAATCAATTGAGTGGAGTTTTGCCTCCAACATTTGGCCTTCATTCGGAGCTCAAACGCTTTGAGGTTTCCAAGAATAAATTGAGCAGGGAATTACCTCAACATTTATGTGCTAGGGGGGCTTTGTTTGGAGTGGTTGTTTCCTACAACAATCTTAGCAGGGAACATTTGGACATGGTATCGGTAATGTTAGCTGGAAATTCATTCTCGAGGGCACTTCCAAGTAAATTGGCAAGGAATTTGTCCAGAGTGGATATCAGTAACAATAAGTTTTCTGGTCAAATTCCTGCTAAAATCTCTTCTTGGATGAACATCGGTGTGTTCAATGCCGACAACAATATGTTGTCAGGAAAAATTCCAGTGGAATTGACCACTCTTTGGAACATCTCTCTTAATATCCTCGATCTTTCGTTCAACCAACTCTCTAGGATGGTCCCCATTGAGTATCAAAATGGAGCATACAATTATAGTTTCTTGAACAATCCCAAGCTGTGTGTCAATGTTTCCACTCTGAAACTCCCTAGATGTGATGCCAAAGTCGTTGACTCCGACAAATTGTCAACCAAATATCTCGTTATGCTCCTAATTTTCGCTCTATTTGGTTTCTTAGTTGTTGTTTTCTTTACCCTGTTCATGCTTCAGAAACAATTCATAGCAGAAGTCGAGATATTGGGCACCATACGCCATTCCAATATAGTGAAGTTGTTGTGTTGCATATCGAATGAAAGCTCAAGCCTTCTTGTTTATGAGTACATGGAGAAGCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACAACATCCATGACAAGTTCAGTCCATAACTTTGTCTTTGATTGGCCAACAAGGTTGCAGATTGTTATCAGAGCTACAAAAGGTCTATGCCACATGCATGAAAACTACTCTGCCTTGACCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAACGTGAAAACTACGGATTTTGGATTGGCTAAGATATTGGTCAAGCAAGGAGAGCCTAACACCATGTCAGGAGTTGCAGGCTCTTACGGATATATCGCACCTGAGTATGCTTATACAACAAAGGTGAACGAGAAGATCGATGTATATAGCTTTGGAGTAGTCTTGCTTGAACTAGTGATGAAGAGAGAACCCAACAGCAGGGACGAGCACATGTGCCTTGTAGAATGGGCATGGGATTAG 3957 43.16 MPKLPLLFATTPFPTLFFLLILSIFQVISQNLDDERSILLDVKQQLGNPPSLQSWNSSSLPCDWPEITCTDNTVTAISLHNKTIREKIPATICDLKNLIVLDLSNNYIVDLTANNFSGDIPAAIGRLRELFYLFLVQNEFNGTWPTEIGEFDWRNTEELQPSVESRTLGSLTQQIRRYDPWRFWEATKFDRFESFLESVVRRDTTFGLHSELKRFEVSENKLSGELPQHLCARGVLLGVVASNNNLSGEVPKSLGNCRMEISNNKNKLSGPIPKALGSLPNLNYLDLSENQFSGQIPPELGHLTLNILDLSFNQLSGMLCVNVGTLKLPRCDAKVVDSDKLSTKYLVTQFQTLDFNEQYILTNLTENNLIGRGGSGEVYRIANNRSGELLAVKKICNNRRLDHKFQKQFIAEVEILGTIRHSNIVKLLFHNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKQGEADTMSGVAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNSRDEHMCLVEWAWDQFKEEKTIEEVMDEEIKEQCERAQVTTLFSLGLMCTTRSPSTRPTMKEVLEILRQCSPQEGHGRKKKDHEAAPLLQNGTYPATYKPCFHDFQQLLHLSPHSCTPFQSIQWRLAHQSLFPYVKQQLGNPPSLQSWNSSSSPCDWSEITCTNNTVTAISLHNKTIREKIPATICDLKNLIVLHLSNNYIPDEFSDILNCSKLEYLLLLQNSFVGPIPADIDQLSRLWYLDLTANNFSGDIPATIGRLWELFYLFLVQNEFNGTWPTEIGNLANLEHLALAYNEKFLLSAFPKEFGTLKKLKYLWMKQANLIAEIPKSFNNLWSLEHLDLSLNKLEDMITGDIIMLKNLTNFLIPTLETFKVFGNQLSGVLPPTFGLHSELKRFEVSKNKLSRELPQHLCARGALFGVVVSYNNLSREHLDMVSVMLAGNSFSRALPSKLARNLSRVDISNNKFSGQIPAKISSWMNIGVFNADNNMLSGKIPVELTTLWNISLNILDLSFNQLSRMVPIEYQNGAYNYSFLNNPKLCVNVSTLKLPRCDAKVVDSDKLSTKYLVMLLIFALFGFLVVVFFTLFMLQKQFIAEVEILGTIRHSNIVKLLCCISNESSSLLVYEYMEKQSLDRWLHGKKQRTTSMTSSVHNFVFDWPTRLQIVIRATKGLCHMHENYSALTIHRDVKSSNILLDAEFNVKTTDFGLAKILVKQGEPNTMSGVAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVMKREPNSRDEHMCLVEWAWD* 1319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 366544 381751 + Vvi4g27 Vvi4g27 784806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g27 1318 Gene3D Ribonuclease Inhibitor 904 1097 IPR032675 -
Vvi4g27 1318 Gene3D Phosphorylase Kinase; domain 1 373 426 - -
Vvi4g27 1318 SUPERFAMILY L domain-like 55 326 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 109 159 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 429 627 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 347 428 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 667 905 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 1041 1130 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 261 347 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 973 1046 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 905 970 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 204 258 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 1129 1318 - -
Vvi4g27 1318 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 16 109 - -
Vvi4g27 1318 SMART serkin_6 364 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g27 1318 ProSitePatterns Protein kinases ATP-binding region signature. 370 394 IPR017441 GO:0005524
Vvi4g27 1318 SUPERFAMILY Protein kinase-like (PK-like) 356 609 IPR011009 -
Vvi4g27 1318 SUPERFAMILY L domain-like 668 970 - -
Vvi4g27 1318 ProSiteProfiles Leucine-rich repeat profile. 97 118 IPR001611 GO:0005515
Vvi4g27 1318 Gene3D Ribonuclease Inhibitor 671 839 IPR032675 -
Vvi4g27 1318 Gene3D Ribonuclease Inhibitor 201 372 IPR032675 -
Vvi4g27 1318 ProSiteProfiles Leucine-rich repeat profile. 1046 1067 IPR001611 GO:0005515
Vvi4g27 1318 Gene3D Transferase(Phosphotransferase) domain 1 1125 1316 - -
Vvi4g27 1318 SUPERFAMILY Protein kinase-like (PK-like) 1128 1310 IPR011009 -
Vvi4g27 1318 Pfam Protein kinase domain 1130 1307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g27 1318 Pfam Protein kinase domain 366 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g27 1318 Pfam Protein kinase domain 443 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g27 1318 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Vvi4g27 1318 Pfam Leucine rich repeat N-terminal domain 678 704 IPR013210 -
Vvi4g27 1318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Vvi4g27 1318 SMART LRR_typ_2 95 118 IPR003591 -
Vvi4g27 1318 SMART LRR_typ_2 730 753 IPR003591 -
Vvi4g27 1318 SMART LRR_typ_2 777 801 IPR003591 -
Vvi4g27 1318 SMART LRR_typ_2 279 303 IPR003591 -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 109 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 973 1046 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1041 1130 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 347 428 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 109 159 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 905 970 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 429 627 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 261 347 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1129 1318 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 667 905 - -
Vvi4g27 1318 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 204 258 - -
Vvi4g27 1318 SUPERFAMILY L domain-like 909 1081 - -
Vvi4g27 1318 Gene3D Ribonuclease Inhibitor 840 903 IPR032675 -
Vvi4g27 1318 Gene3D Ribonuclease Inhibitor 33 162 IPR032675 -
Vvi4g27 1318 ProSiteProfiles Protein kinase domain profile. 1059 1318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g27 1318 ProSiteProfiles Protein kinase domain profile. 364 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g27 1318 Gene3D Transferase(Phosphotransferase) domain 1 427 634 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76619 PF00069 Pkinase 1.10E-33 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g27 - K00924 vvi:100250973 750.355