Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g271 ATGGCCTGGTCGGAAGGAGTTGAGGAAACTCGTCTTCTCATTGCGCCGGATGTTAATGCAATTGGAAATGGCTTAGGGCAATTTTTATCCTTTCGCCATCCCAAATCAGGAAAAGCGACATGTTATCTCTTTAAAAATGGGACACTCCAAGAACTTAATTGGTTTAAGCAATCTTACGGGTCTTGGTTCCTCGGGGATTATGTCTGTGAAGATGGGCGCCTATATACTGCCACTATAGTTGATCCTGTTTTCATTATGTTGCCCATTTTTGAGGAAGCTAGGATGAAGAAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTCGTTAACAGCTATCCTGGATATCAACATTTAATACCCATTGCAGAGAATTGTATGCAAGTAGTTTGTGAAATCAAAGAAATCGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTATAAGGTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCTCGTGATAAGAAGGATACATTAACTGATGCGATCTCAATATTGGGGGAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCCAACTGCTCCAGACAATAGTTTAGGGTCTTCCAATCAATTACAGGGAAAGAGTGGGAATGAAAGAAAAACTACGAGACCTGGAAAGCAACCTAAAAAGGCAAAAGTGGAGAAAGATTCAAGAAACATCAAAGACATGTTTAGCAGGGCTTCTAGAAAGTGA 834 40.29 MAWSEGVEETRLLIAPDVNAIGNGLGQFLSFRHPKSGKATCYLFKNGTLQELNWFKQSYGSWFLGDYVCEDGRLYTATIVDPVFIMLPIFEEARMKKRDDPGKFRQLDEIMFVNSYPGYQHLIPIAENCMQVVCEIKEIGSSKFFRLDDSKVLAWLCYKVHQLKQILPTLDKNYAARDKKDTLTDAISILGEYLEDEPWLKLLCDHLKLNLLDATMKASVIEFHPTAPDNSLGSSNQLQGKSGNERKTTRPGKQPKKAKVEKDSRNIKDMFSRASRK* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2639714 2646512 - Vvi4g271 Vvi4g271 785050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g271 277 Pfam Ydr279p protein family (RNase H2 complex component) wHTH domain 84 174 IPR019024 -
Vvi4g271 277 PANTHER RIBONUCLEASE H2 SUBUNIT B 1 277 IPR040456 GO:0032299
Vvi4g271 277 MobiDBLite consensus disorder prediction 226 277 - -
Vvi4g271 277 Pfam Ydr279p protein triple barrel domain 27 81 IPR041195 -
Vvi4g271 277 CDD RNase_H2-B 12 185 IPR040456 GO:0032299
Vvi4g271 277 MobiDBLite consensus disorder prediction 246 277 - -
Vvi4g271 277 Gene3D - 13 78 - -
Vvi4g271 277 Gene3D - 80 208 - -
Vvi4g271 277 MobiDBLite consensus disorder prediction 228 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g271 K10744 RNASEH2B; ribonuclease H2 subunit B - vvi:100268103 561.992
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g271 . . . . . . . . Cmo05g00644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00559 Cpe11g00541 . . . . . . . . . . . . . . . . Csa02g02308 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014903 0 2 0 0 0 1 1 0 0 1 1 0 0 1 1 1 0 1 1 0 1 1 0 0 1 0 0 1 1 1 17