Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g273 ATGGCAGAAGAAACGCAGTTCAAATGGGAAGGAAAAGCCACCGCGGAGCTCAAGTCCACCAAGCCTGACCAAGTCTGGCCTTTCTTAGAGGATTTTTGCAGCCTCCACAAGTGGATGCCCAGTCTTGATACTTGCTATCAAGTGGAGGGTGTCAAGGGTCAGCCCGGCCTCATTCGCTACTGCTCCTCCACAGCAGCATCGCCGGACAACCCTGACCAGACCACAGTCAATTGGGTCAAAGAGAAGCTTCTCACCATTGATCCCATCAACCACTGCTTCAGCTATGAGGTTCTCGACAACAACATGGGGTTCAACTCCTATGTGACCACCTTCAAAGTAATCCCGATCAACGGCGGTGGGTGCCTGATCCAGTGGTCCTTCGTTTGTGATCCGGTCCAAGGGTGGAGATACGAGGATTTGGCGTCTTATATCGACTCCTCTCTCCAATTCATGGCTAAGAAGATGGAAGAGACTCTCCAGCACGCAATCTGA 492 51.83 MAEETQFKWEGKATAELKSTKPDQVWPFLEDFCSLHKWMPSLDTCYQVEGVKGQPGLIRYCSSTAASPDNPDQTTVNWVKEKLLTIDPINHCFSYEVLDNNMGFNSYVTTFKVIPINGGGCLIQWSFVCDPVQGWRYEDLASYIDSSLQFMAKKMEETLQHAI* 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2657032 2657524 + Vvi4g273 Vvi4g273 785052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g273 163 PANTHER LACHRYMATORY-FACTOR SYNTHASE 1 161 - -
Vvi4g273 163 CDD PYR_PYL_RCAR_like 9 156 - -
Vvi4g273 163 Gene3D - 2 162 IPR023393 -
Vvi4g273 163 SUPERFAMILY Bet v1-like 20 160 - -
Vvi4g273 163 PANTHER OS05G0202300 PROTEIN 1 161 - -
Vvi4g273 163 Pfam Polyketide cyclase / dehydrase and lipid transport 13 159 IPR019587 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g273 - - - vvi:104878993 350.517
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g273 . . . . Bpe02g01186 . . . Cmo05g00612 . . . . Car12g00228 Sed01g1257 Cpe07g00208 . Bhi04g00863 Tan02g2552 Cmetu03g1677 . Hepe10g0374 . Lcy13g1423 . . . . . . . . . . Cone20ag0326 . . . . Blo17g00064 Blo18g00076 . . Bpe14g00521 . . . . . . . Cma12g00245 . Car05g00531 Cpe11g00514 . . . . . . . . Cla08g01212 Cam08g1674 Cec08g1252 Cco08g1370 Clacu08g1372 . Cre08g1156 . Csa02g02260 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009180 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 32