Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g276 ATGGCCAAAAGAGGAGCTCAAACATGTGGATTATTTATCATCTCCATGTTCTTCTTCTTCTTCAGTTTTGGCATGTCCGCAAGGGAGGAGATAGAGCTGCTGCTCTCCTTCAAAGCTTCAATCAATGATCCGCTTGGGTTTCTCTCCAATTGGAATTCCTCCGTTGATTTTTGCAACTGGTATGGTATCTTATGTACGAACTCATCTCATGTTTCCAGTATTGATCTCTCCGGGAAGAACATCTCCGGCGAGATTTCTCCTGTATTTTTCGGTTTGCCGTATATTGAAACTGTCAATCTCTCCAACAATGCTCTTTCCGGTGGAATTCCGGGCAACATCTCTTTGTGTTATTCGCTTCGATATCTCAATCTTAGTAACAATAATTTGACGGGTTCTATGCCAAGGGGCTCAGCTTCCGGGCTTGAAGCTTTGGATCTCTCCAACAATGTGATTTCCGGTGAAATTCCAGCGGATATGGGATTATTTTCCAGACTCAAGGTGCTTGATCTTGGTGGAAATTTTTTGGTGGGGAAGATTCCAAATTCTATTGCAAATATCACAAGTTTAGAATTCTTGACTTTGGCTTCCAACCAATTGGTTGGCGAAATTCCTAGAGAATTAGGCCGAATGAAGAGCTTGAAGTGGATTTACTTGGGCTACAACAATCTCTCCGGTGGTATTCCAAAAGAGATAGGCGAGTTAACTTCTCTGAACCATCTTGATCTTGTCTACAACAATCTCACTGGTGAAATCCCATCCTCCCTTGGAAACCTCAGCGACCTTCACTTCCTCTTTCTCTACCAAAACAAGCTTTCGGGTTCAATCCCTCCTTCCATTTTCGACCTTAAAAAGTTGATTTCGCTTGATTTAAGCGATAATTCTCTTTCGGGTGAGATTCCGGAGCTTGTAATTCAGTTGCAGAACTTGGAGATTCTTCATTTGTTTGCCAACGATTTTACTGGGAAGATTCCAAGAGCTTTAGCTTCTTTGCCTCGGCTTCAAATCCTCCAACTATGGTCCAACAAATTGTCCGGGGAGATTCCGAAGAACCTTGGCAAACAAAATAATCTCACAGTACTGGACCTCTCCACCAACAATCTCTCCGGAGAAATTCCCGAGAGCCTTTGCAACTCAGGGCGCCTCTTTAAACTCATCCTCTTCTCAAACTCACTGGAAGGTGAAGTCCCAAAGAGTTTAAGTGACTGCAGAAGCTTGCGGCGAGTCCGCCTTCAGAGCAATCACTTCTCAGGTGAATTGTCATCGGAATTCATGAAGCTGCCCCTAGTCTACTTCCTTGATATCTCGGATAACAATCTTACAGGCAAAATCAGTGATCGGAGGTGGGATATGCCATCACTTCAGATGTTGAGTTTAGCAAGAAACAGATTTTTTGGGAACTTGCCTCAGTCTTTCGGTGCTAGCAAGCTTGAGAACTTAGACTTGTCGGAAAATCAGTTTTCCGGTGCCGTCCCGTCGAGTTTTGGGAACTTGTCCGAGCTCATGCAGTTAAAGCTGAGTGAAAACATGCTTTCAGGTGATATCCCAGAAGAATTATCGTCATGTAAGAAGCTTGTGAGTCTAAACCTCAGCCACAATCAGCTCAGTGGTCATATTCCCGCTAGTTTCTCTGACATGCCAGTTCTTGGACAGCTCGATTTGTCTCAGAATCAATTATCGGGAAAAATCCCACCGAATTTAGGGAGAGTGGAATCACTTGTTCAAGTGAATCTTTCCAACAATCATTTGCATGGCAGTTTACCTTCCACCGGAGCGTTCCTCGCCATCAATTCAAGCTCAGTTTCAGGAAACAATCTTTGTGGTGGGGATACTACAAGTGGGTTGCCACCATGCAAAAGGTTAAAAACCCCAGTTTGGTGGTTCTTCGTTACTTGTCTTCTGGTTGTCTTGGTGGTGCTTGCTCTTGCTGCTTTTGCCGTTGTGTTCATCCGACGCCGAGATGGATCAGAGCTCAAGAGAGTAGAACATGAAGATGGGATGTGGGAAATGCAGTTCTTTGATTCCAAGGCCTCAAAATCAATCACAATCAAAGGCATACTGTCATCTACAACAGAAAATAATGTGATTTCAAGAGGAAGGAAAGGGATTTCATACAAGGGGAAGACTAAAAATGGTGAGATGCAATTTGTGGTGAAGGAAATAAATGATAGTAACTCAATTCCTTCTAGTTTCTGGACAGAATTCGCTCAATTTGGTAAGCTTCGGCATTCAAATGTTGTCAAGCTAATCGGACTGTGCCGGTCTCAAAAGTGTGGATATTTGATTTCTGAGTACATAGAAGGGAAGAATTTGAGTGAAGTTCTTCGAAGTCTAAGCTGGGAGCGTAGACAAAAAATTGCCATTGGGATATCAAAAGCCCTAAGATTTCTGCACTGTAATTGTTCACCCAGTATGGTGGTCGGTAACATGTCACCACAGAAGATCATAATCGACGGAAAGGATGAGCCTCACCTGAGACTGAGTCCTCCATTGATGGTCTGTACAGACTTCAAATGCATCATATCCTCAGCCTATTTTGCCCCAGAAACCAGAGAAACTAAAGACACAACAGAGAAGAGCGATATCTATGGATTTGGCCTCATTCTGATCGAACTAATGACCGGCAAAAGCCCCACCGACGCAGAATTTGGCGTGCATGGAAGCATTGTGGAGTGGGGTCGTTACTGCTACTCAGACTGTCATCTTGATATGTGGATTGATCCAATAATTAGGGCACAGGTATCAAGCAATCAGAACCAGATGGTTGAAATCATGAACCTAGCCCTTCACTGCACTGCCACTGACCCTACTGCAAGACCTTGTGCAAGCGATGTATTGAAAACCCTAGAGTCTGTGCTGAGATCAAGTTCTTGTGTTTCAGGCCTGAAATTTTCTTCACCTATTTAG 2904 43.66 MAKRGAQTCGLFIISMFFFFFSFGMSAREEIELLLSFKASINDPLGFLSNWNSSVDFCNWYGILCTNSSHVSSIDLSGKNISGEISPVFFGLPYIETVNLSNNALSGGIPGNISLCYSLRYLNLSNNNLTGSMPRGSASGLEALDLSNNVISGEIPADMGLFSRLKVLDLGGNFLVGKIPNSIANITSLEFLTLASNQLVGEIPRELGRMKSLKWIYLGYNNLSGGIPKEIGELTSLNHLDLVYNNLTGEIPSSLGNLSDLHFLFLYQNKLSGSIPPSIFDLKKLISLDLSDNSLSGEIPELVIQLQNLEILHLFANDFTGKIPRALASLPRLQILQLWSNKLSGEIPKNLGKQNNLTVLDLSTNNLSGEIPESLCNSGRLFKLILFSNSLEGEVPKSLSDCRSLRRVRLQSNHFSGELSSEFMKLPLVYFLDISDNNLTGKISDRRWDMPSLQMLSLARNRFFGNLPQSFGASKLENLDLSENQFSGAVPSSFGNLSELMQLKLSENMLSGDIPEELSSCKKLVSLNLSHNQLSGHIPASFSDMPVLGQLDLSQNQLSGKIPPNLGRVESLVQVNLSNNHLHGSLPSTGAFLAINSSSVSGNNLCGGDTTSGLPPCKRLKTPVWWFFVTCLLVVLVVLALAAFAVVFIRRRDGSELKRVEHEDGMWEMQFFDSKASKSITIKGILSSTTENNVISRGRKGISYKGKTKNGEMQFVVKEINDSNSIPSSFWTEFAQFGKLRHSNVVKLIGLCRSQKCGYLISEYIEGKNLSEVLRSLSWERRQKIAIGISKALRFLHCNCSPSMVVGNMSPQKIIIDGKDEPHLRLSPPLMVCTDFKCIISSAYFAPETRETKDTTEKSDIYGFGLILIELMTGKSPTDAEFGVHGSIVEWGRYCYSDCHLDMWIDPIIRAQVSSNQNQMVEIMNLALHCTATDPTARPCASDVLKTLESVLRSSSCVSGLKFSSPI* 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2681348 2685591 + Vvi4g276 Vvi4g276 785055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g276 967 SMART LRR_typ_2 330 354 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 186 210 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 545 569 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 234 258 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 474 496 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 522 544 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 282 306 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 497 521 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 450 473 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 356 378 IPR003591 -
Vvi4g276 967 SMART LRR_typ_2 116 139 IPR003591 -
Vvi4g276 967 ProSiteProfiles Protein kinase domain profile. 689 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g276 967 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515
Vvi4g276 967 Pfam Leucine Rich Repeat 356 377 IPR001611 GO:0005515
Vvi4g276 967 Pfam Leucine Rich Repeat 236 258 IPR001611 GO:0005515
Vvi4g276 967 SUPERFAMILY Protein kinase-like (PK-like) 691 954 IPR011009 -
Vvi4g276 967 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 963 - -
Vvi4g276 967 Gene3D Transferase(Phosphotransferase) domain 1 765 959 - -
Vvi4g276 967 SUPERFAMILY RNI-like 70 368 - -
Vvi4g276 967 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Vvi4g276 967 Pfam Leucine rich repeat 70 129 IPR001611 GO:0005515
Vvi4g276 967 Gene3D Ribonuclease Inhibitor 29 137 IPR032675 -
Vvi4g276 967 Pfam Protein kinase domain 692 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g276 967 Gene3D Ribonuclease Inhibitor 226 326 IPR032675 -
Vvi4g276 967 Gene3D Phosphorylase Kinase; domain 1 652 764 - -
Vvi4g276 967 Gene3D Ribonuclease Inhibitor 344 618 IPR032675 -
Vvi4g276 967 Gene3D Ribonuclease Inhibitor 138 225 IPR032675 -
Vvi4g276 967 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Vvi4g276 967 PANTHER - 5 963 - -
Vvi4g276 967 SUPERFAMILY L domain-like 300 622 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g276 - - - vvi:100242450 1861.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g276 . . . . . . . . . . Cma01g01604 . . . . . . . . . . . . . . . . . . . . . Cone7ag1439 . . . Csa03g04544 Chy04g00158 Cme03g01761 . . . . . . . . . Cmo01g01494 Cmo09g00612 . . Car01g01224 . . Cpe02g00508 . . . . . . . . . . . . . . Lsi08g01069 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006305 1 1 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 3 1 1 1 1 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76620 PF00069 Pkinase 7.10E-23 CL0016 Vvi PK