Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g277 ATGGCGGTTAGTTCGAGCTGTAAGGATGCGAAAATGGCGTTGGACAATGGGAAGTATGTTAGGTACACGCCCGAGCAGGTCGAAGCGCTCGAGAGGTTGTATCACGACTGCCCGAAACCCAGCTCGCTTCGCCGCCAGCAGCTTATCAGGGAATGCCCAATTCTCTCCAACATCGAGCCCAAGCAGATTAAAGTTTGGTTTCAGAACCGAAGATGCAGAGAAAAGCAGCGGAAGGAGGCGTCACGCCTCCAAGCTGTGAATAGGAAGCTAACAGCCATGAATAAGCTGTTAATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCACAGCTGGTGTATGAGAACAGTTTTTTCCGCCAACAAACTCAGAATGCGACCCTTGCCACCACAGACACCAGTTGTGAATCGGTGGTGACAAGTGGTCAACACCATTTGACTCCTCAGCATCCACCAAGGGATGCCAGTCCTGCAGGACTTTTGTCTATTGCAGAGGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGCACGCGCATGCGGCCTTGTCAGTCTAGAGCCAACAAGAGTCGCAGAAATCCTCAAAGATTGGCCTTCATGGTATCGTGAGTGCCGCAATGTGGATGTTCTTAATGTGTTGTCTACTGGAAATGGTGGAACCATAGAACTGCTTTACATGCAGCTCTATGCGCCTACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTCCGTTATACATCTGTTTTGGAGGATGGGAGTCTTGTGGTCTGTGAAAGGTCACTTAACAACACTCAGAATGGCCCAAGTATGCCACCGGTGCAGTATTTTGTGAGAGCTGAAAAGCTACCAAGTGGGTATTTGATAAGACCCTGTGAAGGGGGTGGATCAATCATTCATATAGTTGATCATATGGATTTAGAGCCATGGAGTGTACCTGAAGTGTTGCGCCCTCTCTATGAGTCATCAACATTGCTTGCTCAGAAGACCACAATGGCGGCTTTACGCCAACTGAGGCAGATATCTCAAGAGGTTTCCCAGCCAACAAATACTGGTTGGGGAAGAAGGCCTGCAGCTCTGCGTGCACTTGGCCAGAGGCTAACCAAGGGTTTTAATGAAGCTGTTAATGGGTTTACGGATGAAGGATGGTCTATGATGGAAAGTGATGGTATTGATGATGTTACCCTTCTTGTGAACTCCTCTCCTGCGAAAATGATGGGAGTAAATCTTTCTTATGCCAGTGGATTTCCATCTATGAGCAATGCAGTGCTGTGTGCCAAAGCATCTATGCTTTTACAGAATGTGCCTCCTGCAATACTTCTTAGATTCTTGAGGGAACACCGATCAGAATGGGCAGACAGCAGTATTGATGCTTATTCTGCGGCTGCTGTTAAAGCTGGCCCCTGTACCTTACCAGTGTCTCGAGCTGGAGGTTATGGGGGTCAGGTCATTCTCCCACTGGCTCACACTATTGAGCATGAAGAGTTCATGGAGGTCATTAAACTTGAAAATGTTGATCACTATCGGGAAGACCTGATGATGTCTGGAGATGTCTTCCTCTTGCAACTTTGTAGTGGAGTGGACGATAATGCTGTGGGCACCTGTTCTGAACTCATCTTTGCTCCAATTGATGCCTCTTTCTCTGATGATGCACCTCTTCTTCCTTCTGGTTTTCGAATTATTCCCCTTGATTCTGGGGTGGATGGCTCTAGTCCAAATCGTACCCTCGACCTTGCTTCTTCTCTTGAAGTCGGGCCAGCTGGAAACAAGGCATCTAGTGACAACTCTGGGCACACTGGGAGCGCAAAATCTGTGATGACAATATCATTTCAATTTGCGTTTGAAATGCACCTTCAAGAAAATGTGGCATCCATGGCTCGGCAGTATGTCCGCAGTATCATATCATCTGTTCAGAGAGTGGCATTAGCACTCTCTCCTTCTCGATTTGGCCCTCAAATGGGTTTTCGCCCACTACCAGGCACTCCTGAGGCGCACACACTTGCTCGGTGGATCTGTCAGAGCTATAGGTGCTATTTGGGAGTGGAGCTGCTCAAACCCAGTAATGAAGGAAATGAATCCATTCTCAAAACTCTCTGGCATCACTCTGATGCTGTCATGTGCTGCTCGTTAAAGGCACTGCCAGTTTTTACATTTGCAAATCAGGCAGGGCTTGACATGCTTGAGACAACCTTAGTAGCCCTTCAGGATATAACTCTGGAGAAGACCTTTGATGACAATGGAAGAAAGACCCTCTGCTCTGAGTTCCCACAGATAATGCAGCAGGGTTTTGTGTGTCTTCAAGGTGGTGTTTGCTTGTCTAGCATGGGGAGGCCGGTCTCCTACGAGAGAGCAGTGGCTTGGAAGGTGTTGACCGAAGAGGACAATGCTCATTGCATATGCTTCATGTTCATCAACTGGTCTTTCGTTTGA 2520 48.06 MAVSSSCKDAKMALDNGKYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQHHLTPQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVSLEPTRVAEILKDWPSWYRECRNVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQYFVRAEKLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQKTTMAALRQLRQISQEVSQPTNTGWGRRPAALRALGQRLTKGFNEAVNGFTDEGWSMMESDGIDDVTLLVNSSPAKMMGVNLSYASGFPSMSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCTLPVSRAGGYGGQVILPLAHTIEHEEFMEVIKLENVDHYREDLMMSGDVFLLQLCSGVDDNAVGTCSELIFAPIDASFSDDAPLLPSGFRIIPLDSGVDGSSPNRTLDLASSLEVGPAGNKASSDNSGHTGSAKSVMTISFQFAFEMHLQENVASMARQYVRSIISSVQRVALALSPSRFGPQMGFRPLPGTPEAHTLARWICQSYRCYLGVELLKPSNEGNESILKTLWHHSDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKTFDDNGRKTLCSEFPQIMQQGFVCLQGGVCLSSMGRPVSYERAVAWKVLTEEDNAHCICFMFINWSFV* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2700606 2710044 - Vvi4g277 Vvi4g277 785056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g277 839 CDD START_ArGLABRA2_like 156 371 - -
Vvi4g277 839 CDD homeodomain 18 78 IPR001356 GO:0003677
Vvi4g277 839 Pfam START domain 162 370 IPR002913 GO:0008289
Vvi4g277 839 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Vvi4g277 839 Pfam MEKHLA domain 696 838 IPR013978 -
Vvi4g277 839 SUPERFAMILY Bet v1-like 161 372 - -
Vvi4g277 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 4 839 IPR044830 GO:0003700
Vvi4g277 839 CDD bZIP 70 109 - -
Vvi4g277 839 Gene3D - 196 376 IPR023393 -
Vvi4g277 839 ProSiteProfiles START domain profile. 152 380 IPR002913 GO:0008289
Vvi4g277 839 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Vvi4g277 839 SUPERFAMILY Homeodomain-like 17 81 IPR009057 -
Vvi4g277 839 SMART START_1 161 371 IPR002913 GO:0008289
Vvi4g277 839 Coils Coil 73 114 - -
Vvi4g277 839 SMART HOX_1 15 81 IPR001356 GO:0003677
Vvi4g277 839 Gene3D - 11 84 - -
Vvi4g277 839 PANTHER CLASS III HD-ZIP PROTEIN CNA1 4 839 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g277 Vvi9g302 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14741 PF01852 START 1.80E-53 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g277 K09338 - vvi:100243970 1681.0