Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g279 ATGCTCATTTCTCTAGCGACCTATGCGTGCCGTATGATGATTTGGCTGAGCTCGAATGGCTCTCGAACATCGTTGAGGAATCATTCTCGAGCGAGGACTTGGAAAAGCTTCACAAGCGCGCACGAGCCATGCCATGCAAGTGGACGTCGCGCCTTCTCGCGCTTTCCCCTACAAAAGGAAAGCCCCGAAGTTGTGGCCGGAGGCTGCAGCGATGGGCGGAAATGCTTGCACTGCGCCACAGACAAGACTCCGCAGTGGCGAACCGGACCCATGGGACCCAAAACTCTGTGCAATGCTTGCGGGGTCAGGTACAAGTCGGGGCGACTCGTACCTGAATATCGACCCGCAGCGAGCCCGACATTTGTGTTGACAAAGCACTCGAACTCGCACCGAAAAGTGTTGGAGCTCCGAAGGCAGAAGGAGATGGTAAGGTCCCAGCACCAGCATCAGCAGCAGCAGTTCCTTCATCATCAGAACATGGTTTTCGACTTCCTTCTTTGCCTAATATGGCAAGTTCTGAAACCAATTTTTCACAATTTTAGTAATTTTTTCATTTTCAGTTCTTATCATGTGTTGCATATGAATTTTTGA 591 50.76 MLISLATYACRMMIWLSSNGSRTSLRNHSRARTWKSFTSAHEPCHASGRRAFSRFPLQKESPEVVAGGCSDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQHQHQQQQFLHHQNMVFDFLLCLIWQVLKPIFHNFSNFFIFSSYHVLHMNF* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2730000 2731754 + Vvi4g279 Vvi4g279 785058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g279 196 PANTHER GATA TRANSCRIPTION FACTOR 48 165 - -
Vvi4g279 196 ProSitePatterns GATA-type zinc finger domain. 75 100 IPR000679 GO:0006355|GO:0043565
Vvi4g279 196 ProSiteProfiles GATA-type zinc finger domain profile. 69 105 IPR000679 GO:0006355|GO:0043565
Vvi4g279 196 CDD ZnF_GATA 74 121 IPR000679 GO:0006355|GO:0043565
Vvi4g279 196 Gene3D - 68 119 IPR013088 GO:0006355|GO:0008270
Vvi4g279 196 PANTHER GATA TRANSCRIPTION FACTOR 48 165 - -
Vvi4g279 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 72 133 - -
Vvi4g279 196 SMART GATA_3 69 119 IPR000679 GO:0006355|GO:0043565
Vvi4g279 196 Pfam GATA zinc finger 75 108 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g279 Vvi9g303 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14742 PF00320 GATA 1.40E-15 CL0167 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g279 - - vvi:100266300 219.935