Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g279 ATGCTCATTTCTCTAGCGACCTATGCGTGCCGTATGATGATTTGGCTGAGCTCGAATGGCTCTCGAACATCGTTGAGGAATCATTCTCGAGCGAGGACTTGGAAAAGCTTCACAAGCGCGCACGAGCCATGCCATGCAAGTGGACGTCGCGCCTTCTCGCGCTTTCCCCTACAAAAGGAAAGCCCCGAAGTTGTGGCCGGAGGCTGCAGCGATGGGCGGAAATGCTTGCACTGCGCCACAGACAAGACTCCGCAGTGGCGAACCGGACCCATGGGACCCAAAACTCTGTGCAATGCTTGCGGGGTCAGGTACAAGTCGGGGCGACTCGTACCTGAATATCGACCCGCAGCGAGCCCGACATTTGTGTTGACAAAGCACTCGAACTCGCACCGAAAAGTGTTGGAGCTCCGAAGGCAGAAGGAGATGGTAAGGTCCCAGCACCAGCATCAGCAGCAGCAGTTCCTTCATCATCAGAACATGGTTTTCGACTTCCTTCTTTGCCTAATATGGCAAGTTCTGAAACCAATTTTTCACAATTTTAGTAATTTTTTCATTTTCAGTTCTTATCATGTGTTGCATATGAATTTTTGA 591 50.76 MLISLATYACRMMIWLSSNGSRTSLRNHSRARTWKSFTSAHEPCHASGRRAFSRFPLQKESPEVVAGGCSDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQHQHQQQQFLHHQNMVFDFLLCLIWQVLKPIFHNFSNFFIFSSYHVLHMNF* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2730000 2731754 + Vvi4g279 Vvi4g279 785058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g279 196 PANTHER GATA TRANSCRIPTION FACTOR 48 165 - -
Vvi4g279 196 ProSitePatterns GATA-type zinc finger domain. 75 100 IPR000679 GO:0006355|GO:0043565
Vvi4g279 196 ProSiteProfiles GATA-type zinc finger domain profile. 69 105 IPR000679 GO:0006355|GO:0043565
Vvi4g279 196 CDD ZnF_GATA 74 121 IPR000679 GO:0006355|GO:0043565
Vvi4g279 196 Gene3D - 68 119 IPR013088 GO:0006355|GO:0008270
Vvi4g279 196 PANTHER GATA TRANSCRIPTION FACTOR 48 165 - -
Vvi4g279 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 72 133 - -
Vvi4g279 196 SMART GATA_3 69 119 IPR000679 GO:0006355|GO:0043565
Vvi4g279 196 Pfam GATA zinc finger 75 108 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g279 - - - vvi:100266300 219.935
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g279 Vvi9g303 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g279 ECH 61 163 C2C2-Gata Transcription Factor Family AT5G25830 73.1 5.6e-39 158.7
Vvi15g383 . 1 226 C2C2-Gata Transcription Factor Family AT2G45050 56.0 5.5e-61 231.5
Vvi15g383 . 1 223 C2C2-Gata Transcription Factor Family AT3G60530 60.4 2.5e-68 255.8
Vvi9g303 ECH 45 284 C2C2-Gata Transcription Factor Family AT4G32890 50.8 5.4e-60 228.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14742 PF00320 GATA 1.40E-15 CL0167 Vvi TF