Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g28 ATGTCGAAACCACTATTTTTATTTGCCAAAATTTCATTCCCCGCTCTGTTTCTCCTCCTAGTCCTCTTCTTACCCCTTCAAATAATTTCCCAAAATCTGCATGATGAACGATCAATCCTCCTAGACGTTAAACAACAACTGGGCAATCCACCGTCACTCCAATCGTGGAATTCTTCATCCTCGCCCTGTGATTGGCCGGAAATTACATGCACCAACAATACCATCATTGCAATTTCGCTCCACAATAAGACCATCAGAGAGAAAATTCCAGCCACAATTTGTGACCTCAAGAACCTCATCATACTTGACCTCTCCAACAATTACATTCCCGACCTCACCGCAAACAATTTCTCTGGAGATATTCCTACAGCAATTGGGCGGCTACGGGAGCTGTTCTACTTGTTTTTGGTCCAAAACGAGTTCAACGGCACCTGGCCAAAGGAGATTGGTAATTTGGCGAATCTTGAACATTTGGTCATGGCCTATAATAACAAATTCCTGCCTTCAGCCCTTCCAAAGGAGTTTGGCGCATTGAAGAAGCTGAAGTATCTGTGGATGAAACAGGCGAATTTGATCGGGGAAATACCGGAGAGCTTCAACAATCTATGGAGTCTGGAACACTTGGATCTCTCACTCAACAAATTGGAAGGCACGATCCCAGGAGGCATGCTTATGTTGAAGAATTTGACTAATTTGTATTTATTCAATAATAGATTGTCCGGCCGCATTCCTATGACCATAGAAGCTCTCAACTTGAAAGAAATTGATCTTTCCAAGAACTATTTGACGGGGCCGATACCAACGGGTTTCGGGAAGCTACAAAATTTGACGAGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACATTGGAAACCTTCAAAGTTTTTAGCAATCAATTGAGTGGAGTTTTGCCTCCAGCATTTGGCCTTCATTCGGAGCTCAAACGCTTTGAGGTTTCCGAGAATAAACTAAGCGGGAAATTACCTCAACATTTATGCGCAAGGGGGGCTTTGCTTGGAGTGGTTGTTTCCAACAACAATCTCAGCGGGGAAGTGCCCAAGTCCCTCGGGAATTGCACAAGTTTGCTCACAATTCAGCTTTCCAACAATTGCTTTTCAAGCGAGATTCCTTCCGGCATCTGGACATCCCCGGACATGGTATCGGTGATGTTATCTGGAAATTCATTCTCGGGGGCACTTCCAAGTAGATTGGCAAGGAATTTGTCCAGAGTGGATATCAGTAACAACAAGTTTTCTGGTCCAATTCCTGCTGAAATCTCTTCTTGGATGAACATAGGTGTGCTCATTGCCAACAACAATATGTTGTCAGGAAAAATTCCAGTGGAATTGACCAGTCTTTGGAACATCTCTATTCTGTTGCTTAACGGGAATCAATTCTCGGGTGAACTTCCATCCCAGATCATCTCATGGAACTTAATATCCTCGATCTTTCGTCCAACCAACTCTCTGGGATGGTCCCCATTGAGTTTCAATATGGAGGATATGAACACAGTTTCTTGA 1551 43.39 MSKPLFLFAKISFPALFLLLVLFLPLQIISQNLHDERSILLDVKQQLGNPPSLQSWNSSSSPCDWPEITCTNNTIIAISLHNKTIREKIPATICDLKNLIILDLSNNYIPDLTANNFSGDIPTAIGRLRELFYLFLVQNEFNGTWPKEIGNLANLEHLVMAYNNKFLPSALPKEFGALKKLKYLWMKQANLIGEIPESFNNLWSLEHLDLSLNKLEGTIPGGMLMLKNLTNLYLFNNRLSGRIPMTIEALNLKEIDLSKNYLTGPIPTGFGKLQNLTSLNLFWNQLSGEIPANISLIPTLETFKVFSNQLSGVLPPAFGLHSELKRFEVSENKLSGKLPQHLCARGALLGVVVSNNNLSGEVPKSLGNCTSLLTIQLSNNCFSSEIPSGIWTSPDMVSVMLSGNSFSGALPSRLARNLSRVDISNNKFSGPIPAEISSWMNIGVLIANNNMLSGKIPVELTSLWNISILLLNGNQFSGELPSQIISWNLISSIFRPTNSLGWSPLSFNMEDMNTVS* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 397121 399004 + Vvi4g28 Vvi4g28 784807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g28 516 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 111 - -
Vvi4g28 516 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 111 499 - -
Vvi4g28 516 SMART LRR_typ_2 273 297 IPR003591 -
Vvi4g28 516 SMART LRR_typ_2 369 393 IPR003591 -
Vvi4g28 516 SMART LRR_typ_2 96 119 IPR003591 -
Vvi4g28 516 SMART LRR_typ_2 202 226 IPR003591 -
Vvi4g28 516 Gene3D Ribonuclease Inhibitor 35 109 IPR032675 -
Vvi4g28 516 Pfam Leucine Rich Repeat 98 118 IPR001611 GO:0005515
Vvi4g28 516 Pfam Leucine Rich Repeat 251 273 IPR001611 GO:0005515
Vvi4g28 516 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 111 499 - -
Vvi4g28 516 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 17 111 - -
Vvi4g28 516 SUPERFAMILY L domain-like 43 360 - -
Vvi4g28 516 Gene3D Ribonuclease Inhibitor 249 509 IPR032675 -
Vvi4g28 516 Gene3D Ribonuclease Inhibitor 110 248 IPR032675 -
Vvi4g28 516 SUPERFAMILY L domain-like 298 505 - -
Vvi4g28 516 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Vvi4g28 516 ProSiteProfiles Leucine-rich repeat profile. 98 119 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g28 K00924 E2.7.1.-; kinase [EC:2.7.1.-] - vvi:104878975 941.414
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g28 . . . . . . . . . . . . . . . Cpe07g00201 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01205 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10