Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g283 ATGCTAGAAACCAACGTGGTAAGATGGACTTCGAAGATCACGGATAATGCACGTAGAGGCCTCGTCGACCAAGCGCTATCTTGCTTCTTACAAATGCTGCGTGCAGGTATCGAGCCAAATGCCATAACGTACTCAGCCACAATCAGCGCCTGTGCTCAATCAACACGACCCAGTTTGGCTACAAGCCTGCATTGTTTGATTCTTAAAAAAGGGTTCTCAAATCAGCTCTTTGTTTCAAGTGGGTTGATCTCTATGTACTCGAAGCATGACCGCATAAAAGAAGCTCGTTTCTTGTTCGACGATATGCCTGAAAGAGACGATGTATCCTGGAATTCAATGATTGCAGGGTATTCGCAGCGCGGTTTGAACGAGGAAGCTTGTGGCTTGTTTTGTAGTATGATAAATAGTTGCGAAAATTGGAAATTGCTTGTCAGTGATTTTACTCTGGCTACTGTTCTCAAGGCTTGTGGCGGTTTGGGCTGTTCTAGAATCGGCAAATGCGTGCATGGGTATGCAGTTAAAATTGGTTTTGATTCGGATTTATTTGTTTCTGGGTCGACCGTCTATATGTACTGCAAATGCGGTATTTTAGATATGGCAGGCCTAGCTTTTGATCAAATTGAAAATAAGGATATTGTAGCTTGGAACACTATGATTACTGGGTATGCTCAAAATTGTTATGAAGAAGAGGCTATTGAATTATTCTATCAGATGGAGTTAGAAGGCTTTAAGCCTAATGACACAACATTTTGCTGTGTTTTGAAGGCCTCAACTGCAATGTCGGACAGTGCAGTGGGTAGATGCTTCCATGCTAAAGTCCTGAAGTTGGGATGTTCAATGGATGTTTTTGTGGCTACTGCACTAGTCGATATGTATTCGAAATTTTATGATATAGAAGATGTGGAGAGAGCTTTTGGTGAAATGAGCAAAAGGAATTTGGTGTCCTTTAATGCACTCATCACAGGCTATAGTTTGATGGGTAAGTATGAGGAAGCATTAAGAGTTTATTCCCAGTTGCAATCTGAAGGAATGGAACCTGACTCCTTCACATTCGTAGGCCTTTTCTCCTCTTGCTCTGTATCAAGTACTGTTGCTGAAGGAGCTCAAGTGCATGTCCACTCGGTCAAGTTTGGTTTGGACTCGGATGTCTCGGTTGGGAACTCAATAGTGAACTTCTATTCTAAGTGTGGCTTCACTGACTCTGCATTGGAGGCTTTTGAGTCAATAAATAGACCTAATTCCGTATGCTGGGCTGGAATTATTTCAGGCTTTGCACAAAATGGTGAGGGAGAGAAAGCCCTCATGCAGTTCTGCAAAATGCGCAAGTTTATTGATAAAACAGATGAGTTCTCTTCCTCAAGTGTTATAAAAGCAGTTTCAAGTTGGGCTGCGGTTGAACAGGGAAGGCATTTGCATGCCCATGTGATGAAGTCGGGGCTTGACTGCACAATATATGTAGGAAGTGCAGTGATTGACATGTACTCAAAATGTGGGATGGTAGAAGATGCACAGAAGGTTTTCTCTGTTATGCCTGAAAAGAATGTTGTTTCTTGGAATTCAATGATAACAGGTTATGCCCAAAATGGTTTCTGCAAAGAAGCACTTCTCCTATTTCAGGAAATGACAAGTTCTGGAATTTTGCCCACAGCTGTAACATTTGTTGGGATCCTATTTGCTTGTAGCCATGCGGGTTTAGTGGAAGAAGGGAGAAACTTTTACAATTTAATGGTTCATAATTATGGAATTCCACCCTCAATGGAACATTGCACTTGTATGGTGGACCTCCTTGGCCGAGCAGGTTATCTTGAAGAGGCAGAGGCCTTTCTTCTCAGTTCTTCATTTTCAAAGGAACCCGGAATCTGGGGGTCTCTTCTTTCTGCCTGTGGAGTTCATAAGAATTCTGATGTTGGCTCTCGAGCTGCTCAGCACTGCTTGTTTTTAGAGCCTCATTATTCCTCCTCTTACACTGCTTTATCTAACATATATGCATCTAAAGAATTGTGGTCTGAGGTATCAAGAATAAGAGATCTGATGAAGGATATGGGGGTTGAGAAGGAACCAGGGTGCAGCTGGATTGAGTCATTGAGGTTTGGAGTACAATAA 2103 42.32 MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRDLMKDMGVEKEPGCSWIESLRFGVQ* 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2749900 2752003 - Vvi4g283 Vvi4g283 785062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g283 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Vvi4g283 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 136 IPR002885 -
Vvi4g283 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vvi4g283 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Vvi4g283 700 TIGRFAM PPR: pentatricopeptide repeat domain 314 348 IPR002885 -
Vvi4g283 700 TIGRFAM PPR: pentatricopeptide repeat domain 17 41 IPR002885 -
Vvi4g283 700 TIGRFAM PPR: pentatricopeptide repeat domain 108 135 IPR002885 -
Vvi4g283 700 TIGRFAM PPR: pentatricopeptide repeat domain 516 549 IPR002885 -
Vvi4g283 700 TIGRFAM PPR: pentatricopeptide repeat domain 213 246 IPR002885 -
Vvi4g283 700 Pfam PPR repeat 589 609 IPR002885 -
Vvi4g283 700 Pfam PPR repeat 415 442 IPR002885 -
Vvi4g283 700 Pfam PPR repeat 108 135 IPR002885 -
Vvi4g283 700 Pfam PPR repeat 82 105 IPR002885 -
Vvi4g283 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 266 693 - -
Vvi4g283 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 144 418 - -
Vvi4g283 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 4 254 - -
Vvi4g283 700 Gene3D Tetratricopeptide repeat domain 166 268 IPR011990 GO:0005515
Vvi4g283 700 Gene3D Tetratricopeptide repeat domain 373 467 IPR011990 GO:0005515
Vvi4g283 700 Gene3D Tetratricopeptide repeat domain 269 372 IPR011990 GO:0005515
Vvi4g283 700 PANTHER OS07G0578800 PROTEIN-RELATED 266 693 IPR045215 GO:0003723|GO:0009451
Vvi4g283 700 PANTHER OS07G0578800 PROTEIN-RELATED 144 418 IPR045215 GO:0003723|GO:0009451
Vvi4g283 700 PANTHER OS07G0578800 PROTEIN-RELATED 4 254 IPR045215 GO:0003723|GO:0009451
Vvi4g283 700 Pfam E motif 631 693 IPR046848 -
Vvi4g283 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Vvi4g283 700 Gene3D Tetratricopeptide repeat domain 7 161 IPR011990 GO:0005515
Vvi4g283 700 Gene3D Tetratricopeptide repeat domain 531 699 IPR011990 GO:0005515
Vvi4g283 700 Pfam PPR repeat family 513 560 IPR002885 -
Vvi4g283 700 Pfam PPR repeat family 5 52 IPR002885 -
Vvi4g283 700 Pfam PPR repeat family 312 358 IPR002885 -
Vvi4g283 700 Pfam PPR repeat family 210 256 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g283 - - - vvi:104878995 1410.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag1327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012810 1 1 0 1 0 0 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 1 0 0 2 1 1 0 0 1 21