Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g285 ATGGATGGCCAACTTGGTTTCAGTGATGACAATTGTTTAGTCCCCCACTTGTTAGAGCTGTTCCTTGGGTTGGGCTCTCTTGGTTCTCTGACAGATGAGTCAGATACGAAGAATAAAACACCATTGAAGGTTAATGCTGTCAAAGCTGGTGGAATGATGTCACTGGCAATTGATAATCTTGGGGGCCTCTGGATGTGGGGCAATGTCCCTGAAAGCAGTCCCGATAAAGGGGAATTCTCTCTTGTTAGCAGTTTCACTCCAATTCCTGTCTGGGACTTTCATGGCCACACTGTTGTGAAGGTGGCATGTGGAAATGAGCATGTTGTAGCCCTAGTTAGTCATGGGGAAACATATAAAGGTGGGGATCTCATTTGCTACTCTTGGGGTAACAACGGCCATGGCCAGTTAGGTCTTGGAGATACAGAGAACAGGTTACGTCCCGAAGTGGTAAAAACTTTCAACCTCGAATCCTTATGGGAAGTTTATGAGGTAGCATGTGGAGCCTTCCACACAGCCCTGCTCACTCACAAAAAGAGACCAAGTGACACATTAGAAAGTATGTGCTGGACATTTGGTCTAGGGGATAATGGGCAACTTGGGCATGGAACCACAAAAGGTATTTCGTTGCCCGAGCCTGTAAAAGACTTGCCAGAACATAGATTCCTGGTTTCTGTTGACTGTGGCTTATTTCACACTAGTGTAGTATCATCGGCCGGAGAGGTGTGGTCATGGGGGATGGAAAAGGGCCTTGGCTTATGCCCAGATGCTAGTTTCACTGGAACAGATCCTGGGGATGCTCCTTCTCCACTTTTGTATGGATCAAAATTTCGGGATCCAGTTCAAGTTGCATGTGGAGCTGCCCATACTGTTCTTGTTGCAGATGATGGATATAAGCTTTGGTCTTGGGGCAGGGGAAGGAGTGGGGTTCTGGGAAATGGTAAGACAGTGGATTGTTTTGCTCCTAGTACTGTATTATGGCCCCCACTCACTGAGGATTTCAAGGAGTTGGAATCGGGGACTACAAAGGAAATGAAGCTCCTTCACTCAAAACTGTCTACAATGGAAAGATATGCAAGCATACTTCATGGCTCAATTTTTGGAAAACCTTTTGAAGAACAGGATATTCCAATCTCATTGCAGAATTCAGGCTTTTTTGACATTGCAAAGGAATGGGAGAACATGTTGGAGTCAGCTGATCGTGGTAAGCTTGTGATGTTGGAAAAGTTTTACCGAAACATGCTTGCTGGTGTTAAAGATAAGCTAATGAAGAGAAGGATCCAGGAGATTATCAAGGAATGTCTTCCTCCTCCAGCGACAGGAAACTAG 1326 45.48 MDGQLGFSDDNCLVPHLLELFLGLGSLGSLTDESDTKNKTPLKVNAVKAGGMMSLAIDNLGGLWMWGNVPESSPDKGEFSLVSSFTPIPVWDFHGHTVVKVACGNEHVVALVSHGETYKGGDLICYSWGNNGHGQLGLGDTENRLRPEVVKTFNLESLWEVYEVACGAFHTALLTHKKRPSDTLESMCWTFGLGDNGQLGHGTTKGISLPEPVKDLPEHRFLVSVDCGLFHTSVVSSAGEVWSWGMEKGLGLCPDASFTGTDPGDAPSPLLYGSKFRDPVQVACGAAHTVLVADDGYKLWSWGRGRSGVLGNGKTVDCFAPSTVLWPPLTEDFKELESGTTKEMKLLHSKLSTMERYASILHGSIFGKPFEEQDIPISLQNSGFFDIAKEWENMLESADRGKLVMLEKFYRNMLAGVKDKLMKRRIQEIIKECLPPPATGN* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2754157 2755987 + Vvi4g285 Vvi4g285 785064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g285 441 Pfam Regulator of chromosome condensation (RCC1) repeat 126 174 IPR000408 -
Vvi4g285 441 Pfam Regulator of chromosome condensation (RCC1) repeat 189 234 IPR000408 -
Vvi4g285 441 Pfam Regulator of chromosome condensation (RCC1) repeat 239 292 IPR000408 -
Vvi4g285 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 186 238 IPR000408 -
Vvi4g285 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 123 177 IPR000408 -
Vvi4g285 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 239 295 IPR000408 -
Vvi4g285 441 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 11 337 - -
Vvi4g285 441 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 338 434 - -
Vvi4g285 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 11 337 - -
Vvi4g285 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 338 434 - -
Vvi4g285 441 Gene3D - 123 346 IPR009091 -
Vvi4g285 441 Gene3D - 1 122 IPR009091 -
Vvi4g285 441 SUPERFAMILY RCC1/BLIP-II 22 330 IPR009091 -
Vvi4g285 441 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 164 174 IPR000408 -
Vvi4g285 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 61 114 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g285 - - - vvi:100261092 874.389
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33